Scaffold Ga0209188_1000083

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1000083
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 111668
• Total Scaffold Genes: 141
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (8.51%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014975	Metagenome / Metatranscriptome	258	Y
F015337	Metagenome / Metatranscriptome	255	Y
F024553	Metagenome / Metatranscriptome	205	Y
F047061	Metagenome	150	Y
F051118	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_100008330	F014975	N/A	MEKVFNQYKNMLVVHKKYQGHVCGYNDSHIILAVETEDNKNFWRKLQNPRIMDEYKDVKYRYIFEDESELIKQHKYDINSNI
Ga0209188_100008333	F051118	N/A	MCNREILEVIIEEVGSEKAAEFCRLVSLMYDIRYNACKHEEPLTEYDYEREWWALAGIELNKKIQ
Ga0209188_100008351	F047061	N/A	MRCSDNELEMLEEEIQENIEWLSTIENDDIECIGIENLEAILTRFFNRKISLSL
Ga0209188_100008369	F024553	N/A	MAKLTEEIQKVIDNTSNMLYKEEIYINGVHEYDYHKLKATADVTVHTLYFSDDNEWSEHIQKQVAMQLVDNGNGVELIGVNSKKTIDYLEAEQLHILLRLSSGHCVYQIAESKTKSSF
Ga0209188_100008380	F015337	N/A	MKTIKLQPTEFWQFRQLAFAMSIAFACTISQGVYIVEANIDQLQKLGY