NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1000076

Scaffold Ga0209188_1000076


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1000076 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)116441
Total Scaffold Genes202 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)139 (68.81%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036693Metagenome / Metatranscriptome169Y
F042300Metagenome / Metatranscriptome158N
F082114Metagenome / Metatranscriptome113N
F089888Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_100007610F082114GGAGMSTMTLDSNGNLGVGTITVSSNTTGMYNTAVGSSALAFGGFDMEDFLDTHSFNKITVEHKVAEFELAKLRETVPTYADEIKENLSKNLARDIIKKATFTKKHNVDSDTHHFLGRVWVFTEGELKDLINEARNA
Ga0209188_100007612F042300N/AMDLLNFYERPFRAKYIPSKVWKDLDNYRNDSKGLSNYFKKWRTKVEFLPQKSKAKLYDSYVAVGGEYGPDERQCCIQIYTTNFDRFPFTETTWNKFKYRILQTHMHELIHFMQFDRRGDEWSNYIVPYKKVNHEKKNIERRYLSEFDEIQAYAHCVLLDFKIYKPTISTEELINRAKYSKDSSTLNYILKAFNYDYRNNAAIPKLMQQIAKWDRKYQRTIRASRRPK
Ga0209188_100007641F089888N/AMKTIGLLLLSFSMYANAQAFKYNYEITCGPVMPIIQFLSETQQEKLTWTGLDISDGSVYSLWEDKEGNWTLLKKNSQIACIIGSGTKTKVI
Ga0209188_100007653F036693GAGMYNKRMKPRNPIAKDVRTPKYRMRVVESKVQYIRQPKHKKDIYES
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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