Scaffold Ga0209188_1000057

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1000057
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 129563
• Total Scaffold Genes: 181
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 110 (60.77%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004256	Metagenome	446	Y
F019784	Metagenome	227	Y
F024484	Metagenome / Metatranscriptome	205	Y
F029568	Metagenome / Metatranscriptome	188	Y
F043882	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_1000057102	F024484	N/A	MLIPTNYTVDITLFQEACHRLPKGAMKTTINNPTGDFFYDPWVIKDEYKGTVWETLYNSLPEVKGEARIIILDPGQCYQVHADIDDRYHLNVLGDNSYLIDLVRETMHPLVQDGIWYDMDASFLHTATNFGRRARVQLVVRKLLKKNKLTNPVAVSVVTSIDNPNYARFLFDNTMSPWFNEANKLGFINSFVQGEVTIKFNIEQDRLQSLKRILPSEFIITSNN
Ga0209188_1000057107	F004256	N/A	MNYNYYYNNVPGETPSRNNLIYTSLISEDNKIFVQWYYNDTEYHKGQNEVVDPKLMNDKFHRELHFLQNMAWHNPDMVPKIIEVNIPEKKIYLEIDGEDFWNLAKCSIENYDVVLPDWQEQMLAILQAHKDRGWYKYSLHPSSYFVVDGKLKSINYFFTYSSNEGPISIADHSSHIYSARQAIMRKQVEAMGLDWDEPQSLDKLQQLCFESFRSNYPDDFIEQAKRIYD
Ga0209188_1000057111	F029568	N/A	MYRYDLTNTEIKIYYETCPEFESVRELCLQEDNWLRNNYTKESLVLEQHTGYGVVYQKSTGNPMLMAGVFHDVRYPSNVAKMVNRLYTFPDFRTNRSNMVDGFRVADKLIKELIQINCFNIYLVTMQNRPHRGGKRWWDIWCNAMNTASNNMWTVGTGYIQTCPWPVQKCWQNFVYHELLPGKFAEWNPVVINDEEWANMPEGV
Ga0209188_1000057113	F043882	N/A	MGTFYIARPEISYIHVPRTGMAMKKIISDWLKTNFIVIDNEDWMIDHPNLQMVRELIPTGKTMSVVRNPWQRVYSLYRKVSTEGYWLDWNGKTLLDLKPINEWVIDYCNPDLPFEFPRWFNKSTNQVDFLNYNGNWVDFIIKAEEIATEFKPVQEYLECKRPLPDLSGYDHWEFKKYFNDASIKSISKVHERDIDFFKYSIS
Ga0209188_100005784	F019784	N/A	MINLNVFELDKIKKICEEVGTEYFTLGQTDESGIGSILTLTYDTEIAGYPAKISVEVRGVESW