Scaffold Ga0209188_1000055

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1000055
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 131248
• Total Scaffold Genes: 200
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 144 (72.00%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Associated Families: 14

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F006543	Metagenome / Metatranscriptome	370	Y
F007110	Metagenome / Metatranscriptome	357	Y
F007305	Metagenome / Metatranscriptome	353	Y
F008812	Metagenome / Metatranscriptome	327	Y
F009680	Metagenome / Metatranscriptome	314	Y
F012108	Metagenome / Metatranscriptome	283	Y
F036210	Metagenome / Metatranscriptome	170	Y
F042870	Metagenome / Metatranscriptome	157	Y
F043902	Metagenome / Metatranscriptome	155	Y
F057320	Metagenome / Metatranscriptome	136	Y
F070037	Metagenome / Metatranscriptome	123	Y
F085623	Metagenome / Metatranscriptome	111	Y
F086678	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_1000055124	F007110	GGAG	MLCVYCQSMIDNDRLDFLVEYNRAMVCKDCSTEQKAVGYMDWGHKTAPSLVMVPANAKETIRILDRANRRAR
Ga0209188_1000055125	F007305	N/A	MKIIQKTIKKAYQHWQPDPLIRCYHYAAAFDGTKMIEFAQNNPIKMSTKAFRIGKRFNIPKYLEYPYVHSESHLISKLLDRYNSIDPNWSICVLRINRLGLILGSKPCVNCSKLLNAVGLTQVYHSDDNGDFVCPTKTIKVDALTMPIGMV
Ga0209188_1000055144	F042870	N/A	MTELPDSKIPWWDNHYEDIYSEEIEDGYPYDMGTKVQE
Ga0209188_1000055151	F043902	GGAG	MTVQQLRNSGYKVRVLHNRLYNGYYKWQVGSKTAEGYGYGPIDPDTKGGSTQIIIDSPSGDHYDGLAICSKKENYNKKLGVRIALGRCNIDRIFYVQAEATNE
Ga0209188_1000055159	F085623	GGA	MTLLRTLNLEYDLVEVHYNELLKNKPYLVRVFSYNNTDPSELRLDEKEVKNLYQTLKEHELL
Ga0209188_1000055178	F036210	GAGG	MRTRYVSEINRKEVQRKYIDQILGELDFMQIKDRLRDYLEHEKDKESNYALEAEIRKEAPEVLVENWEDFNGPATLTEEEHYHA
Ga0209188_1000055193	F008812	AGGA	MIQWVGIVITILGLAYTGIKDYQKGDIKFPPMPQKPALTKIVYPVQYCLMAYDPNVDKVFYLHENGQWHDYAPQQRRYATQAQPYQAQGQEAVGSAHGSQGASVYRYGQSPQANPNPIR
Ga0209188_1000055194	F086678	GGAG	MSKYYIKCGTLEIIYSCDKAPRYAAMDAIWETNENDTLDEYIYLDERGYRDYKNADGKTCVLHTSHILKDAGWSIE
Ga0209188_1000055195	F057320	AGGA	MSYVGLYDDAGSKNAFYIIRDKKIGRKRVGFKEFSDKKEAEFAHRVQKHLAQFDLAPMVYGDVGFIRRNDGQLTYYGYLTEVARPMPTCHDDDCDGECFQSECNNGTTIDEVVYGLNEHGLDYNDAHSGNFGYVRRNGKWVAVVIDLGIESFTEWDEDIYGEFDYDGDSYVDNYGVCNCVDCKKFREKHL
Ga0209188_1000055196	F000325	AGGAG	MKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLGNGCYAEATENQYKNARTAGFANVITEKNKIRSMILEAKRREKSIRWHERGDWFLNGELDLDYVANVTWACESILADGDTLPDMWFYTHIYDARLVSLEKYMNVYASVHDDNDMGEALAQGFKLFAWCDSDMKIAPKRPKSKVKAEAWRQALPKLVVLNATKFVVCPEIRRGRSEITCTGTKDSISCDLCVRGLANVLFPAH
Ga0209188_1000055199	F006543	N/A	MYTDTRMIGNYNTFGERKMKKFSFAVDIVGDEIDSADVVATLTKALNDELPGDVHANVKPAGIKAFSEQGYKVWRARVTGVTAEAAGDAHDGKVETETETVA
Ga0209188_1000055200	F012108	N/A	KIELSVRESLNMIANGCSLDMFDKIVCALEVALGVNQRRMVTITGGLTLDNRIHSIKAIRQHTGWGLKEAKDWSDYLVGGWHYDKFVPAKPGAKQSITLKTPEAAEALLRDLVGLGCEGYLS
Ga0209188_100005554	F070037	GAG	MNFTESFQEFSSRLSTMDLALYAGAGLVLWVLFKDKLSPVQTFLGGLLAKMKGSTPSSVVPIVVPSVDAVVVPKLVANQPDDTFFKLVVSWKQTRDLAVQSGCGEAVKVADQMFPFLSPNVCKKEDKVS
Ga0209188_100005558	F009680	AGAAGG	MSETIIHFWENIATTSIGIIVTMVGFWVAIGRNMTTKAEVLVMIETQSPYIHDRQFIMERLNTNKETQAAFANALQRNTEVMTELKIQIATLGKTLEALEDRIEK