Scaffold Ga0209188_1000048

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1000048
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 138459
• Total Scaffold Genes: 207
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 143 (69.08%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001008	Metagenome / Metatranscriptome	807	Y
F004256	Metagenome	446	Y
F006053	Metagenome	382	Y
F009749	Metagenome / Metatranscriptome	313	Y
F012023	Metagenome / Metatranscriptome	284	Y
F012868	Metagenome / Metatranscriptome	276	Y
F024484	Metagenome / Metatranscriptome	205	Y
F029410	Metagenome / Metatranscriptome	188	Y
F029568	Metagenome / Metatranscriptome	188	Y
F042715	Metagenome / Metatranscriptome	157	N
F042897	Metagenome	157	Y
F043882	Metagenome	155	Y
F048089	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_1000048112	F043882	AGGA	MGTFYISSPELAYVHVPRTGMAMKKIISDWLKTNFDVKDAEPWMIDHPHLGMVKDRYPYAKTMTVVRNPWQRVYSLFRKISTEGYWLDWNNQTLLDLKPINEWVADYCDPDIEFNFPRWFTRFTNQVDFIHVNDENVDFVCKAETLERDFKKIKEYLNCDIPLPDISGYDHYEYKQYFNDASIKSIAKLHARDIDYFNY
Ga0209188_1000048114	F029568	N/A	MQNRYDVQDTHIVIYYKSLPKFEEARQLCLKEDNWLRHNYTEENLVVEHHTGYGVVYQTSTGKPMVMGGVFRDDRYPKNVAKMINRLYTFPEFRMKPTDMTDGFRVTCKLIDALEKVNNYDLYLITMQNRNRGGKRWWDTWVNQMAIASDNKWTLGAGYIQTCPWPVQKCWQNFVYYETTPGAFVNWNTKIIDDNEWQQLEQGK
Ga0209188_1000048117	F004256	AGG	MEFEYYYNHVPGEEPSRNNLIYTSLIDKKKKVFVQWYYNDTDYHQGQNEVVDPKLMEEKFHRELHFLSNMAWRNPHMVPKIIEVNVPERKIYLAINGEDFWNQAKCSVENYDNVLPDWQEQMLAILQAHKDRGWYKFSLHPSSYFIVDGKLKSINYFFTYSSNEGPISIADHASHIYSARQDIMRKQVDAMGLDWDAPQPLDKLQQLCFESFRTNYPDDFIAKAKAIYD
Ga0209188_1000048120	F024484	AGTAG	MLTQTDYTVDSKLFQEACSSLPTGGMKTTINQSTGDFFYDSWVLKDEYKDTVWQTLYDSLPVPKGEARIIILDPNQCYQTHADIDDRYHLNILGEQCYLIDLVTPQLHKLVQDGIWYDMDAGVLHTATNFGRRARVQLVVRQLLKRNKLTDPVSVALASTVANADDARFIFDNTISTWLNKANKLGFINKFSYGNVTINFNIEKDKLNSLKCILPNEFKII
Ga0209188_1000048122	F029410	AGG	MQTFHDIDSVRIHLRDDWKNVAISVSGGADSALLAYLICSLVTDQTVHIISHNRMWKTRPWQSYDSFNVYTWLLTRFPNIRFVRHINFIAPDIEYGNIGPNLTDEYGKKVSGDNIQQRAYAEFVCHTNDVDAYYNGVTRNPRLAQFNGMLERDIERTNDNEHLEYMIHMGRVACHPFRFVDKSWVVNKYKELGIMDLFDITRSCEGEFEDINYTNYKAGQYVPICGECFWCKERTWAIEQSK
Ga0209188_100004814	F042715	AGGAG	MFNQAIDAIQSGKKTIVNTFVSDKEVQSKLVTLIEAQTKFYQGWVDTTLDLAQTLVANAKNTVRKGAK
Ga0209188_1000048160	F001008	AGG	MSKAKHIPKLFIDGETADRITSLTLRDYRAYLKKELKQWKKNPKSDSNPDGYWLHPHDVGLNVQTIAALDLIISHYAEVPEIN
Ga0209188_1000048162	F009749	AGGA	MNQWILIIAMYSPGGDFIDKNTIEFRSKKDCEAVKVQLVQLDSPMRVKHKGLCVTRDHWEGKKKMPGVDYD
Ga0209188_100004820	F042897	GGAG	MATKEAVAQLAAIPERVSVLETKVENINEKLVDLKSDVRDMHDCLDQTRDTVLAQLNVMTNEYRTNAEKYYDHANHLNELQTAQHNELAGKINELEKVKSKWTMYAMSALAFAAGTGWINAINFPHILKFLGL
Ga0209188_10000483	F012868	AGGA	MKYYDYEWDLEPNRILLDQELDIDKLGWKGGDCFKIVNRNGRAMLVKLEAVEQFNKGHRVNGQPS
Ga0209188_100004858	F006053	AGGAG	MKVKKLVMKLNKAEVEHNLKKVKEFWFKLLKKSLKHKHTESVR
Ga0209188_100004868	F012868	AGGAG	MRHYDYDWDLEPEYIKFDPELNIDALGWKHGDCFKVVNRDGRSMLVKLDPVEQFARGHKVNCNE
Ga0209188_100004872	F012023	AGGA	MEQIDYEKLNQRIVEQAYETAFGPTLDKEQLQKLIQDKFERARKYHEALAKAPTFSVN
Ga0209188_100004897	F048089	GAG	MMKPGKTFNLNKQTKRFMATFVNAEDRNHFKRMMIDAQLCSEVVIKSAPRDKNAPRGTANYQTNDTGTASTAV