Scaffold Ga0209188_1000041

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1000041
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 144185
• Total Scaffold Genes: 231
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 168 (72.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006141	Metagenome / Metatranscriptome	380	Y
F010540	Metagenome / Metatranscriptome	302	Y
F014494	Metagenome / Metatranscriptome	262	Y
F039621	Metagenome / Metatranscriptome	163	Y
F040944	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_1000041129	F010540	AGGA	MKIRAIVNGVSFYTTTAAIRGRRVGDFSMQNDALCYMLECMGKDNGIGRSVTYYDHKMVQHKFDVQLSKVAK
Ga0209188_1000041137	F040944	GGAG	MSELTIPFEVADGITRANLLDARNYLKSELAQWAENPKDEQNPEGYWLHPDDVVNNGKLIRALDLIINYYGGEV
Ga0209188_100004146	F014494	GGGGG	MTTKHFECEECGAEGKIIVKGSDVRLEDIVYCPVCSGDIFEEEDLEEDD
Ga0209188_100004160	F006141	GGAG	MILEVIVYGFFTAFGWWGANHYVIEPYFPESKKIERKKDD
Ga0209188_100004176	F039621	AGGAG	MAKILFVVAVIFALIVIMPVATIWSLNTLFPALAIPLSFNTWIATVVLGGVVGGTTGVSFKK