Scaffold Ga0209188_1000037

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1000037
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 150107
• Total Scaffold Genes: 232
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 167 (71.98%)
• Novel Protein Genes: 25
• Novel Protein Genes with Ribosome Binding Sites (RBS): 17 (68.00%)
• Associated Families: 25

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010619	Metagenome / Metatranscriptome	301	Y
F014135	Metagenome / Metatranscriptome	265	Y
F014850	Metagenome / Metatranscriptome	259	Y
F015470	Metagenome	254	N
F015996	Metagenome / Metatranscriptome	250	N
F019323	Metagenome	230	Y
F019602	Metagenome / Metatranscriptome	228	N
F020358	Metagenome	224	Y
F020540	Metagenome / Metatranscriptome	223	Y
F021534	Metagenome	218	Y
F022413	Metagenome / Metatranscriptome	214	N
F029748	Metagenome	187	N
F030080	Metagenome / Metatranscriptome	186	N
F030431	Metagenome / Metatranscriptome	185	N
F030669	Metagenome / Metatranscriptome	184	Y
F044496	Metagenome / Metatranscriptome	154	Y
F047055	Metagenome / Metatranscriptome	150	N
F054849	Metagenome	139	N
F058128	Metagenome	135	Y
F067732	Metagenome / Metatranscriptome	125	Y
F084232	Metagenome / Metatranscriptome	112	N
F085161	Metagenome / Metatranscriptome	111	N
F088298	Metagenome	109	N
F100405	Metagenome / Metatranscriptome	102	N
F101153	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_1000037103	F067732	N/A	MVLNMKIETAIGILNKEREFLGMGFLELLQDIQKYGKMIYSEKTMEAFERFMVDGRKMFAPVAE
Ga0209188_1000037115	F030669	AGG	MTYYVYGAEGSRTTNKVETLLTVCRRQYKLFILGQDYSIEQLRILVPETNFVPHIYHDAKYIGGIKELYDYLYSEVKMEKQFQNETRE
Ga0209188_1000037116	F047055	N/A	MKKTCTLHSIVTTLFLCNFAQAGVVLVEDSSIKDGYYMAKVINVKPIIEKVPYMTTKNYCQKQYGITHYSGPGTNTLVLGMTPPLSTPICKLVNEQVYQSVVKGYQVTYDFKGTLKTAILNNEPSEFVQVYNAP
Ga0209188_1000037117	F044496	AGGA	MKRILAVAVTALIATCAFADDIVNYQIVQVIKVDPIGSMKAISMPRMSCTNVEPIEGAGAPVQTQQQKCVTYSDREFRYNVTAFNVTFEYQGQIRTVKMNYDPGNAIRIKTVTKVYAVE
Ga0209188_1000037120	F015470	AGGAGG	VVTKKVIAKPATKKATPVKKAPVKRTVKKVSPAPASVISVDVSGATKSASSMLDKAIDLIKWVDTPFKLFEVILLASVFFFGYFAWDSRTVILNAITQSSKVTNLKEVNHLIPVAVTLQKDLEAVSVVVHKASLVVNTRTTMLAFGAKGRDNSLDGLISSLFNKDPGRNAAIIGMLNGEVICDKLDVTSKSSEWEAKQGATFICRGGIPPEIGDFDGYVAVGFKTEPADLNVVKTRINLASSEMSR
Ga0209188_1000037121	F054849	N/A	MKWIIAFILSFLSISSLSEQCDDCIGNIVATDTNTCLVSNFYKIAYSIHDPGLRHQQLSSWLTTNGNKCDSKQLVIIWNRLAEWGGASDSAELRGKLLYYFSRAEERERKEKS
Ga0209188_1000037122	F058128	N/A	MDGITWFPIVPPSYSNVDGILADVHAKKNEQKWEEYNKQLIEKIHLRDYLYDLYSKRSHENHIRMEIYNVSTIDFYV
Ga0209188_1000037127	F020540	N/A	MSKIQQFGRPHETFDPGNKKHRKIFHDVMQYRTWGRSPICFWAEDDSSGSNSLMDQCIKAMGRYYMEKEFGQLHNDDPFISGETIRDRPNPHPYIYTRKSTIA
Ga0209188_1000037128	F021534	AGG	MKTKTENEVVHFLKELLHPEGFGWAVTSEISRESKRLLIMIESESSNEQDSTIRQTA
Ga0209188_1000037163	F015996	N/A	MIKITEWYNWVVLQFGEICGWIGLILIHGSTVPVTYLAIQGEPTVLPPLSMVILIWSGLLLFFIRSAITKDKLYMLSNGIGFFLQSIMLAFLVLK
Ga0209188_1000037166	F014850	GGAG	MKIDEDYEITQRDIKYKDKDTVASIKINSGKYKDVEFTFGEINFSEEENPDGTYSIGFNYDIIDEEHKALHGNNDFEAHLGEILNDLLRHSLDEAEKRYKNELGTKNTETPDIG
Ga0209188_1000037195	F084232	GGAG	MQTPIPVQLENWLKIVNNKRSPQDLRDAAILHLTAIRAIIDKSLGTTMKKQGQRKYENMSIR
Ga0209188_100003720	F088298	AGGA	MNIMKTEIKMRTYQRKNGYPSHYYASESEMTNLNFRSAKPAKVQTKFGYYKNGRITSVRFYES
Ga0209188_1000037228	F019323	GGA	MIVEKIKIAEPVRGFTERDRNSKAILNTDMDSLLKYKIQKRKISDINKSRNDIALIRDEVDSIKSDLSEIKQLLLKITKERKE
Ga0209188_100003726	F101153	N/A	MNFTKIVFFNQWRNGDCFINKEYVRDIISRFPNVEFLYAHNNHANIVSDLNCKHITLNEIPAIGTFVPLAVSQNDSKTLYINTWVGCWIGKHLKEKDHANFHCLHTMWKEIFNALEIEMKGDYFFYLPKIDWYRFDLKECDSYLRTIVPKNLILICNGVQQSEQSSMGDMKNIIDSISSSFPDYAFLITHDIGVTKNNVNCTDSIFGSPTGNLNQIGYISQFAKLIVGKNSGPFTYAHTKTNMNNPEQTFMCFSHKMRDCLMGEGEYLTNSYFSDTIDDQVAIKIISDLILTPTYSSNRKPTKHIT
Ga0209188_100003736	F010619	GGAG	MKDDIDFENSHPCMEKIIGSNKLLPVTKSVAKMLMRNPYTSLGKFFKKLSDENLQVLMEIIDEGDSEFNDGMEDVVLMTEMLSRAEGVPSQCIEDITENVNYFGACITCVSLARKGLVRVYYDNMSFGTDQGDKILVEKLD
Ga0209188_100003739	F019602	GGA	MDDRDVIERYILEAWDQGLTDTDVVTYVQYMSSIPVFEIEPVLENLIARMSE
Ga0209188_100003740	F100405	AGGA	MTKSVQQYTKIFEVLQAANAPVPVSTIRAIDGIVATRLSTYLWEIKKNTGFAVRANRDGRTVVSYELVGAGTAPVAKPAKVKAVKTAKAPVVKAAKPVKAKKVTPVPVRAGDSLDGIMSAMAKSSAKKPVNLLDEIDTEVEDFEDRQFAEAYIRT
Ga0209188_100003744	F014135	GGAG	MSSGLTLDYDIADKIALMTMQDQLKYLRKELEDFKEGKWLHPEDVANNIKIIAALELLIPYYGGTV
Ga0209188_100003748	F022413	AGGA	MLLAKPKLTNTLDSKQFKSFAECQEYLEAYTNISMSLVEWIALGKILVAETMTTPEYYPKKVKGQIVMAKFDIEEFA
Ga0209188_10000375	F020358	N/A	MKKFKEFIQGTTLSQEEWEEEVYGPELIETLKQVDGKWALVSKKTGKPLRYYKGEGKPSDEWVADQERQIQYFKHMG
Ga0209188_100003751	F030431	GAGG	MSDIEIEINELLDTTVMLCEDIAAQVGCPVEWVEVIVEKRWNDTLFSNADFINGYDMAKENA
Ga0209188_100003753	F085161	GGAG	MEVYIVKSFGPENGWVNLKAFDNNDAAVYFANTVEKQIPDDIEDEFVEIEVLNVRSW
Ga0209188_100003760	F029748	GGA	MMKFLFGCAVGIFLATAGTSGIAMLIDSSVSKFQNTIKESVREQQPQNIQQRNKYMESL
Ga0209188_100003798	F030080	AGGA	MYIDGMGPRQSMAVEILDTVRFGGLDKIKGANGYAKKKLDNGDAYVVPFGLNKKLFGAVVISAPKRLYITYRLNSKDKTVRMTNAWEVKRFLVKQFIQNT