Scaffold Ga0209188_1000034

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1000034
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 153186
• Total Scaffold Genes: 219
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 165 (75.34%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021754	Metagenome / Metatranscriptome	217	Y
F043282	Metagenome / Metatranscriptome	156	Y
F054799	Metagenome	139	Y
F091915	Metagenome	107	Y
F098694	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_1000034212	F021754	AGG	MENKDYTNFAVQKKVLLDYLQVMIVMEDWHGVSDVANDLRELEAKNNNDYKSK
Ga0209188_100003424	F098694	AGG	MSIQLITDGINGRDERVVLWRTGEYTYEIEIGTGIHKKSIKFYDEEYNGALEEFNAVLNNYSEI
Ga0209188_100003440	F091915	GGAG	MNYALILYTVVAMSGHNSTLTKAYDWRYLTTFANHERCVDAANLMGISSERYRCVAVVMK
Ga0209188_100003442	F054799	AGGA	MKDLLNLLPKLLEMMPGVVKFLKYIPIIMILAGVGYGAYLITLNYKDPFKCVNNEIYQQVRVDSNVYQFKGGYCVDGNNK
Ga0209188_100003448	F043282	AGGA	MRKKSFVVNVGDIIRSYDFKPMVGREDCFVEGMVIEQDQKEVYFDCWKIRVTKDSWSDATDKGRFGQIVFVPKQVSYNEYPGRVMNLSRV