Scaffold Ga0209188_1000023

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1000023
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 168414
• Total Scaffold Genes: 239
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 180 (75.31%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004641	Metagenome / Metatranscriptome	429	Y
F006053	Metagenome	382	Y
F011584	Metagenome / Metatranscriptome	289	Y
F035192	Metagenome / Metatranscriptome	172	Y
F071976	Metagenome / Metatranscriptome	121	Y
F082571	Metagenome / Metatranscriptome	113	Y
F098565	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_1000023134	F011584	AGG	MTEWIVVFFALFFTDVFYTYYLKAVNEDKALVSSVWGVIVFLVASVAVINYTVDHWLLIPACLGAFFGTYVGIRIRKKDD
Ga0209188_1000023135	F082571	GGAG	MLVASWVVVGFFSAIGWWSANHYVIEPYFPEPIKKIEKQVEEK
Ga0209188_1000023155	F098565	GGAG	MMSAKEWDTKMTQIKISAMTSLAAATDATTFPVVESSVNKKLTALALKNYVLGAVVPPNNYWLVDPSRTDTYTSDGSVAKPFKTITAALAYIEARIAANTLTISISGAVVSNPQFIQLLSSTTENVALTRGNIFIGAATPDAGHVPIWINGYVTITPADSSANAINVNRFGLFNVAVNPNSTNHAIQVTGANPSKLYLDDVYCYQSNATKSCVYADNTGTGSRVEMYDCTMARASGSVYLIDIQRGFCSISNLETNGIGQVLNMANDSTGNMLRCGVEANTGAVVTLSGTVQWGMGVCIITNTGTGANTYGVSMSGSATMQFGVCTFNVPAAQATNRAINGVAGNVVLYSGPIFQYGTTNKISTAITLVPLTTTFTAV
Ga0209188_1000023209	F071976	AGGA	MKYLVVVNGVSFYASGAAIKRGVGNSVSVNTVVRQLFENMFNAVGIGSTMHVYDHKMNRVSYDVQISKV
Ga0209188_100002344	F035192	GGA	MKSDETLQKAYGNVPKEVGFFWDMNFLPTWRGFKYYWYKLLRKVTR
Ga0209188_100002378	F004641	N/A	MAEENKQNDKGAFIEKLLFALLPLLIGSTGYLISALGSLQHDVTILNQKVSLVVTTDNKQASNTGAELAREKLRQDLEKEIQKNRDSIMENRTHIAIIEDRQGIKNKIGPVKSD
Ga0209188_100002390	F006053	N/A	MKVKALILKLNKAEVEHKADKVKKFWMKLLKKSLKHKHTQAVK