Scaffold Ga0209188_1000016

Overview

Basic Information

• Taxon OID: 3300027708
• Scaffold ID: Ga0209188_1000016
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 193824
• Total Scaffold Genes: 200
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 148 (74.00%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Associated Families: 12

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000354	Metagenome / Metatranscriptome	1244	Y
F000652	Metagenome / Metatranscriptome	959	Y
F002977	Metagenome / Metatranscriptome	516	Y
F009462	Metagenome / Metatranscriptome	317	Y
F015338	Metagenome / Metatranscriptome	255	Y
F026556	Metagenome / Metatranscriptome	197	Y
F026795	Metagenome / Metatranscriptome	196	Y
F032649	Metagenome / Metatranscriptome	179	Y
F033308	Metagenome	177	Y
F043407	Metagenome / Metatranscriptome	156	Y
F068769	Metagenome / Metatranscriptome	124	Y
F070810	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209188_1000016177	F068769	N/A	MKNFLATVLLCSVITTAPAEPRTLNKPVTCDATVTVFKAIVEEFGETPQWQGSNATAGTRTVLTVNLKTGAWTLIEYTSATACVIGVGENASSTWGIPV
Ga0209188_1000016183	F000354	AGGAG	MAKVNYDNFASFDLNEACDHFDCTDQKAWKKIRPFIVADGTDYEAVMTEGFDFYDISEEEYSAFDAGVKYAMTKMNIAFEKAGVELQICEVDLVDASGFMMVRCDDEPEDFVKRALKKPVMMVDSWV
Ga0209188_1000016197	F000652	GGAGG	MKKVIVRTELMQELEVPDSWEREDVFDFLAEYQSFRTAFQGVSNEDQTARIIDLGVVIETVEQLGEECFDE
Ga0209188_100001642	F026795	AGGA	MAKNYKDYAYFENRPDVVKIFDDLEAYHNFCRLEMFPFDESHLYNRESWAWRNFEKSRRPKRLDSSRERKPYQGKNPKYATVE
Ga0209188_100001646	F043407	GGA	MTTILKNAVSNGLIGSTVSIGYGNAVPPATPLTVGTVYTTNNTGSAGQFLTSTGNGTSWRNFPGDNVLVAKNNPPELEVKGRMVINGRDLEERLDTIEKVLQIPERDVKLEKKHPKLKKLYDEYINALGKYRTFEAIKGDEDGTT
Ga0209188_100001647	F009462	AGGAG	MELHESVKDTYKEMVIKENEGFRLTLKKHEVLSPKGLFSINMLQESLKDGDVIDSQTYNFFMTKQEMQVLANGLVA
Ga0209188_100001649	F026556	GGAGG	MTSALIKLIFGLTLIVIAIALGPILGIWALNTLFPVLHIPLTWETWAAFAILLGGASGLSFGSRRS
Ga0209188_100001652	F070810	GGAGG	MSFPARAIIVMDYKIVIPWHDQDNNWWNQMCADVVEVFGLPGERYTYHPSFEDMSFNFKSKKDYQLCKILLSDKITM
Ga0209188_100001657	F002977	AGGA	MKVQAPAEGILKHNDWGDSKVYRVTCECGSSECDHNVWVEADDTGVEVTIYTTVRTNFWTQTRWYHIWTLLTKGYIDTQSTVCLKSQGALNYAETLKSAIIDVEEFRKQQDDKR
Ga0209188_100001658	F033308	AGGA	MTNAKQLTDELIYRMKTTDLNKFEIKREVGPNWLPRGTVPFDIHASNGIATFEIWAESIQDAEHQVSQFLERGEDEQN
Ga0209188_100001670	F015338	AGAAG	MSLKNGKPNPLNYFNLRRVDFACPHFKYTNLDRYNPGLIKKIDHWIISNLNNRYYIGQGIALDNTNTIVYNTHIGFESEKELSFFTIACPYLQQR
Ga0209188_100001680	F032649	N/A	MESSMDERIEKAFNVANYMATLSNQRKVALEEFNQKLLFYINGATFLITLELINFTKMSLDLGRNSDVPFLDINNLPVNIVDVTEFFTTITDQYFEALNEYSVKFNEIKSKRKISDIVEL