NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209188_1000008

Scaffold Ga0209188_1000008


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1000008 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)241256
Total Scaffold Genes267 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)210 (78.65%)
Novel Protein Genes16 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Associated Families16

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002977Metagenome / Metatranscriptome516Y
F007163Metagenome / Metatranscriptome356Y
F008554Metagenome331Y
F009462Metagenome / Metatranscriptome317Y
F011665Metagenome / Metatranscriptome288Y
F015338Metagenome / Metatranscriptome255Y
F020008Metagenome / Metatranscriptome226Y
F025012Metagenome / Metatranscriptome203Y
F026556Metagenome / Metatranscriptome197Y
F026795Metagenome / Metatranscriptome196Y
F032649Metagenome / Metatranscriptome179Y
F034037Metagenome / Metatranscriptome175Y
F037059Metagenome / Metatranscriptome168Y
F048781Metagenome / Metatranscriptome147Y
F082065Metagenome / Metatranscriptome113Y
F098538Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_1000008192F032649GGAGMDERIEKAFAVANYSATLSNQRRIISEEYQQKLVYYANGATFKVSPDLIAFIKTVLDLGHTSDIPFLDANNFPVVIENVQEFLDNIVSVYFEALNEYTVKYSEIKKKRKIADIVEL
Ga0209188_1000008202F015338AGGMALKTGKPNPLNYFGLRRVEFACPHFKYTYLDRYNPTMLKSIDLWIRHHLNNRYYIGQGIALDNTNTIVYNTQIGFESEKELSFFTIACPHLSQR
Ga0209188_1000008208F011665AGGMQNQINLTPITQFAHLLRAAELSQSKEVKIPIQQARLMNLALVELMEQVRQDYESMFNALKSHVQQEEVQIEIDGGGFEENKS
Ga0209188_1000008214F002977AGGAGMKSLEIQVPAEGIMQTNDWGDSKVYRVTCNCGASDHDHHVWVEADDHEVSVTIYTTVKSNWWSKTRWHAVWTLLTKGYIDTESTVIMSRQQAFNYANTLLSAVEDVESFRNTRQNKAERAKVTKLAEQGDCE
Ga0209188_1000008218F026556GGAGGMTSLTGSLIKLGFGIALIVVAVAFGPIIGIWALNTLFPQYLNIQLTWQTWLAFNILFGGSSIIKLGTRK
Ga0209188_1000008221F009462AGGAMKLHESIKDTYTETIIKEHEGFRLVLKKHEVLMPKGLFSVDMEQQCLKDGKITDTAVYNFFMTKEEMATLAQALTA
Ga0209188_1000008226F026795GAGGMEKMVHLSNIKIEAIMAKNYKEVSYFSTRPDIVKLFEDLEAFHNWCRSELCEFNEGHLYNRESWQWRNFDKSRRPKKPFTGERKPYLGKNPRYNSNDRIPS
Ga0209188_100000828F008554GGAGGMARNSIEDEIADNLGNEMAREIDREILWGMLEGIGWCRVMLPRLIDNNHAIDITHWLEDNCKNSFERNGRDFMFESLQDANWFRLRWGSV
Ga0209188_10000083F098538GGAGMSDQLIAVASSGDQWAAERAQYALQISDAVASGQMSKEEATEVLQDMIATQQLQEQAQADQVKAALFFGITNLISMYV
Ga0209188_100000832F048781AGAAGGMSGWNTIERIRRLEEQIDQLGFKFAKSKHSDWSDDHGALSLKPKDPDVLPIYSRDAELFVGSLERLEDWLAGVRWAREYDMMLRLSDEKKREAAEQKEKNRQLMRTLKEGKRVDGIEK
Ga0209188_100000834F007163GGAGMTLEDLQYIFEYQIEEGTEKLYFMLSDGAGHPLIQRHPSDDLAGLLPMLDSFQYTGHNVMPRFKK
Ga0209188_10000084F082065N/AMKKLLLAVVFVSLTGCSVISSIKDQIPSGWDANQSQVVTDMQQMTRHIDCTGDLKTQLHSLFMKVEWYDIYATTKNTRDMAKLDQVMLTTIREFQERVDKGAVSAIYCDMKKKVLIQQADVIAKTVQGRF
Ga0209188_100000852F020008AGGAGMGQYANTVNAFAMSAARAKVYCMQNTMQSYGQTSYMLNVSTAKFRRDIEAKKVKFIAKLEKEKIVQMQLEIARLQAKQTA
Ga0209188_100000857F025012AGGAGMEAQSREYFVRRLNEVAQAKVQAKAVELFGASGRPQQPTWGMVFEGIKSGDITLKADKVDYTGPYLNPSDVVWPAMEAKSAELEVYRATVAREKQKAMDAVYLDAGAQEALTAFQGI
Ga0209188_10000088F037059GGAGMTYLFNNNMEVANDVGNPLPITGNVTATIGNIITVVTTEDAGDKYSFNNHAANATRGWTMDNTMRPVVSFQNGSADAADVIKILEYEIGNNNANQSTIVYEWYEGPLTIAGAAIPSWTIFGVHSQYRVYQDQYSSNQGNTFTVPTGTYMRHSGIIIGKNTSGDEGPVSLYGGNSRNMLTLCMRRVDNATKLDVWFAFTIRELA
Ga0209188_100000881F034037GAGGVTYFKYCMRNYFPDTHNFEYIADIQWPGCVGEQLDWVSGIVSVEQWLLSYTGPKYQRWAWNMATECYHVSVAFKYDKHRTLFLINWIQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.