Scaffold Ga0209443_1044713

Overview

Basic Information

• Taxon OID: 3300027707
• Scaffold ID: Ga0209443_1044713
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1829
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017485	Metagenome	240	Y
F017826	Metagenome / Metatranscriptome	238	Y
F031867	Metagenome	181	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209443_10447131	F017485	N/A	MNNELKRKDILEGVTFILMCVTIIGMICVLYEVNELKGLMKGASNFRIVNRK
Ga0209443_10447135	F017826	N/A	MDKLKRVWNVVCVPMAFFLGAMNMWIGETAVGCMFILFATNETINKND
Ga0209443_10447138	F031867	N/A	QKLKLTSMKIIYMQRTIEMIVKNEIELSADSLLQTKPTRVETIKEQNYLVYEFDNKEL