Scaffold Ga0209443_1019089

Overview

Basic Information

• Taxon OID: 3300027707
• Scaffold ID: Ga0209443_1019089
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3086
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029433	Metagenome	188	Y
F038591	Metagenome	165	Y
F092026	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209443_10190893	F038591	AGAAG	MSAKVDISVVGVKDTINKLRKLDPELQKQFKVDATAIAQPALNAAKAVYTQVPLSGMSRDWKQKKDGRKIKGFDVAKAKNGVQIKFDTRRNAVGVILIIQKDQAAAIFETAGRANRNSLSNNLSPVQAGRTRLIGPAVYRSRRGIEAAMKSTIAAAARTVERGI
Ga0209443_10190895	F092026	GAGG	MKVKLSVDLHNGTPPVELVTNMYVVCEWEKLENRKVSDGKGIGYSDLCCWAYLILQVRGDSLPASWRQWVKTNPDMEVAAIDETNPNPTALAVTEGN
Ga0209443_10190897	F029433	N/A	DYLVTSNRLNGHSRGDIIKAADLGDLTSDILFLVESGHLSPLKATKSAKPITTEQQE