NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209443_1004109

Scaffold Ga0209443_1004109


Overview

Basic Information
Taxon OID3300027707 Open in IMG/M
Scaffold IDGa0209443_1004109 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8070
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000722Metagenome / Metatranscriptome922Y
F010530Metagenome / Metatranscriptome302Y
F013988Metagenome266Y
F027779Metagenome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0209443_100410910F010530GAGGMTDYSAVLSANYVGKLWTLDGDDYAGLTWLSSGQAPTQAELDAQWPAVDYNNQVAQVETTRRTQYEAQSDGLFFEWQRGTNTKEAWEAAVQAVKDANPYPPAPTKKK
Ga0209443_100410912F027779AGGVIPANPKIPNSRPYTGNSDGAADGPRQGMDEWIRQAIKYGNGAFYNFGSWGIRNMRGSDNLSVHACGRAVDLSFLATEKHPAANRKGMVAFLNIVTANANALGLECVLDYLPKPFGRGWQCTRQRWSKYSKPTIHGAPGGTWCHFEISPAMADSPVLVKQAFQRVFAEIPQ
Ga0209443_100410915F000722GGALEPSEVTEESYPETGITQETRKMYPENYSDKYNKVFKEFVDDIMKPPRPIDRFEDHEILLDELTLMYDAHMTIGGEQNRFNASVIRAAINCIKALSA
Ga0209443_10041092F013988AGGMAAYTVTHKQLTDNYAVLQLLTEAEIEVGASVVITGVDATFNGTYIVYALPQYYFLGVDDEGDLLFDPAIAIPNQVLYAKTADDVARIAASGTLTITQVCTWVTSQMLEDWIGIGTATAGDAAFLTICASACSQFAWRRRMEAGYVDSLTVVPSQDVLLGTQMYGGALYRQRGSMDQFASFQNMGTTPVMGLNGMIRQLLGIDRPQVA
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