Scaffold Ga0209443_1003961

Overview

Basic Information

• Taxon OID: 3300027707
• Scaffold ID: Ga0209443_1003961
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8243
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008305	Metagenome / Metatranscriptome	335	Y
F017788	Metagenome / Metatranscriptome	238	Y
F054581	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209443_100396122	F008305	N/A	YKDIQAFGNSLTWAIDTAKNQGDEQNYKQLLIVWDFFEGLLAEGYIDENTYYG
Ga0209443_10039614	F017788	AGGA	MKKIIITSLLIALLIPNSSAQAATKSLNTKGNKSSCKNIKANYKSEVIANWSNGLASDQDVLKEIDLNINMLTAKQKPTTGKIKTTISSWITSEKNTQIAITDKNFEAITTAMNLKISSVTNFDKLCKSIEK
Ga0209443_10039617	F054581	AGGA	MCPHCNNKLIPLLYGFVDPKYVDMHKEGLVFLVSTTYHTKDSPTAYCKKCEVSFNIKLDYKF