NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209581_1039657

Scaffold Ga0209581_1039657


Overview

Basic Information
Taxon OID3300027706 Open in IMG/M
Scaffold IDGa0209581_1039657 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1980
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000781Metagenome / Metatranscriptome895Y
F002853Metagenome / Metatranscriptome526Y
F007488Metagenome / Metatranscriptome350Y

Sequences

Protein IDFamilyRBSSequence
Ga0209581_10396571F000781GGAMLTVAQLVPLKNRDPYLYETLVKIVAAVNATSRRAGVDPSTPSPAPDPIASLTVRASNGWFDISITDPSNSRPGLFYFAESDITPGFNSPRVYFMGSSRNLYVQLGNQSLYWRAYSQYIGSLPSAPVTFGTPALPVSGGGITGPSPLPSQGSGALTNGNAPGGNGFGIHPGSRITRNSAF
Ga0209581_10396572F007488N/AMVLGFIRARALREILRFEIEMQIREYKPDDLDALKRIHEKQNFPYPFPDLQNPLFLTKIVLTDGEVNVAPGFTKVSSDRVLGAALLRLTAEAYLLLDPKAGTPKARWQSLLLLHEAARRNAWHRGLEDVHAWLPPAIAEKFGRRITQLGWQRDDAWTPYCLRFGKQHDQI
Ga0209581_10396573F002853GAGGMGRGAQDQTRQLTDQQLASINALNQQFLGQQQQVGSLLLPQYQSILKNPGLSPADKAAVTSDSQGAIGSAFDSLQQSAANRAARTRNSAGFADLEDDLARQKGIAEGNQAQQNQLAFANTAFQRQLAALHGLSGLYGVDSNLLARGLGIPAELLNVRANSSRPSGFFSSLGSTLGGTLGALPGALL

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