Scaffold Ga0209581_1030222

Overview

Basic Information

• Taxon OID: 3300027706
• Scaffold ID: Ga0209581_1030222
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2479
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000624	Metagenome / Metatranscriptome	977	Y
F000703	Metagenome / Metatranscriptome	928	Y
F015771	Metagenome / Metatranscriptome	252	Y
F099605	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209581_10302221	F015771	N/A	AANGWFDIAITDPSAARPGLFYFAESDTSPAFHSPRVYFMGASRNLYLQLGNQTLYWRAYSQYIGSLPSAPVTFGSPPVPVTGGGASGPAPLPSSGSGVFVNGVPRGGNGFGTNPGSRIIRQSLL
Ga0209581_10302222	F000703	N/A	MQIREYKSEDLAALRAIHAAQGFDYALPDPGNPLFVTKLVLADDARQTLGAALLRLTAEAYLLLDPRAGTPRQRWQSLLALHEAARRDASVRGLEDVHAWLPPQIARTFGRRLERLGWIRDDAWTPYCKKLCA
Ga0209581_10302223	F099605	AGGAGG	MPSTTNSAFWDFNPSDPVTLTASFIFDTEDTQESAPVATALAAIQARIAAASITATQPDGATVAISVRI
Ga0209581_10302225	F000624	GAG	MPLHWYGFVAAVASGLVQFSLFLRWLHRRMRDDEIVHAFVRDLAVTHLPHIYSALRQIADQKGISVAEAPLVHFVDFSGHRRRR