NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209581_1014895

Scaffold Ga0209581_1014895


Overview

Basic Information
Taxon OID3300027706 Open in IMG/M
Scaffold IDGa0209581_1014895 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4447
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000624Metagenome / Metatranscriptome977Y
F000781Metagenome / Metatranscriptome895Y
F007488Metagenome / Metatranscriptome350Y
F099605Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0209581_10148955F000624GAGGMPLHWYGFLAAAVSGLVQFSLFLRWLHRRMRDDEIVHAFVRDLAVTHLPHIYSALRQIADQKGISVAEAPLVHFVDFSGHRRRR
Ga0209581_10148957F099605AGGAGGMPSTTNSAFWDFNPSDPVTLTASFIFDTEDTQDSAPVATALAAIQARIAAASITATQPDGATVAISVRI
Ga0209581_10148958F007488N/AMQIREYKSEDLAALRAIHAAQGFDYALPDPGNPLFVTKLVLADDAEQTLGAALLRLTAEAYLLLDPRMRGPRQRWQALLALHEAARRDASVRGLEDVHAWLPPRIARTFGRRLERLGWVRDDAWTPYCKKLST
Ga0209581_10148959F000781N/ARSGVDPSTPAPAPGAIASLSVQAANGWFDIAITDPSAARPGLFYFAESDTSPAFHSPRVYFMGASRNLYLQLGNQTLYWRAYSQYIGSLPSAPVTFGSPPVPVTGGGASGPAPLPSSGSGVFVNGVPRGGNGFGINPGSRIVRQSLL
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