Scaffold Ga0209581

Basic Information
Taxon OID	3300027706 Open in IMG/M
Scaffold ID	Ga0209581_1001447 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209581_1001447 Open in IMG/M

Source Dataset Name

Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	27512
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (80.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

27512

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (80.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Centralia

Coordinates

Lat. (^o)

40.7999

Long. (^o)

-76.3402

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F000512	Metagenome / Metatranscriptome	1064	Y
F000739	Metagenome / Metatranscriptome	913	Y
F000885	Metagenome / Metatranscriptome	849	Y
F002750	Metagenome / Metatranscriptome	533	Y
F004677	Metagenome / Metatranscriptome	428	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209581_100144710	F000188	GGGGG	MSVKPELAFDVCWEVYRGAREVLERKRGVCALNWQDTSKFLWRPDIRPKLNEWVADFALAGQAALDGPEHASRMVMFRLFYLGLAPYERARHFLGLSEMSWVKWSEEIRRRCGKELLRRGMFPPRRYFRNAG
Ga0209581_100144719	F000885	GGA	MGTNAHLQFIGEITQICGVIAAVAGVVLSLHHWPTALALIGGGVAFYAGKKLRGSAL
Ga0209581_100144721	F002750	N/A	MWNWLRRFVQTRYVGLLEGEVQRLRAENRALMNSLLGTAGFPPVEFPEAPAQQTLPRLRKRSWHQIQAWREADAAREAASVTESQNH
Ga0209581_100144725	F000512	GAG	MTARRGTIHRAPTNASSRIVVLREKYETPESVARRLELAGGHNRFGEPNYRAVWGWNRLAWIGGKFEDRDETGALLRERVELRFEPKYPAVNRWHIERWVPPEAFGSPRQWYAQTAELADGRSIPALGPYPSRGEYEHCFTLETPHGEFVQLTPTVAEYIARAIERSRSLPRVARRDSLYDRAQRDELAYENWAYDLLDDAVPAFHKQPFVCVT
Ga0209581_100144726	F000739	N/A	MNLLKLEIWLRGALAAAISGAAGGVLTGFAAVGIDPHHFNFQTGMGATFRIAAAAALINAVIGVAAYLQKSPLPSGD
Ga0209581_10014478	F004677	AGGAGG	VPSHKTQPPWEFLLSASRNSLQSYELSRLSHAANLRKEISALLDQWMEENSAAMLARWLMEHRERELTLPEALSASGEPQQQAHSVSDNFFANRASSSRPGRGDA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209581_1001447

Overview

Ecosystem & Geography

Associated Families

Sequences