Scaffold Ga0209581_1000712

Overview

Basic Information

• Taxon OID: 3300027706
• Scaffold ID: Ga0209581_1000712
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54047
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (79.31%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000628	Metagenome / Metatranscriptome	973	Y
F001966	Metagenome / Metatranscriptome	610	Y
F015939	Metagenome / Metatranscriptome	251	Y
F026686	Metagenome / Metatranscriptome	197	Y
F061171	Metagenome / Metatranscriptome	132	N
F077875	Metagenome / Metatranscriptome	117	Y
F078445	Metagenome / Metatranscriptome	116	Y
F091747	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209581_100071212	F026686	AGG	MGSVDTKRLSGEVAARHGLLIREDDPAMALVTMSEIVLEQVLCEAELRLRSLFAEAEEGQKRSQQETLVWVQEEMGRAGSALRAQLQRDIDAGRLQARELVTQLSQVYSRSAVRRWVAVGIVSGLLLVLIGIGLGFELGRWLR
Ga0209581_100071213	F077875	GGAGG	MRFLLGFLFGASYSGNRAFRVAFLLIILFLAFCLYQMSKPLGHGGRVTPPPAQVR
Ga0209581_100071216	F061171	GAG	MTRYDAAAAVVLKATAVVTIVCAASLVACEVLVPWHPLFAGLTLSAGHLGMIWVGAALGGSGFLACCVLEGRSYMRSWVLYVYAFAFLAFSFVLLMEWFEVSGASGLRS
Ga0209581_100071226	F000628	AGG	MYISYRLDRSKNLLRTPQSSLVRPVAIRRKAGFDVFNVRLLIGLDKLLRKKRRYQGDLSASINDALLAVNLNTVKLVTLQGKKPKTARETQVVILRRLIRRIQRIAEARGCSMNQLVNSGLLAYYSRGRRGKLDGSSKAVRGKSMAAYDKMSTEERQQLMQVLASLSGLQEGPEEEFPDGTHYEYDAALKTTVEVSPSGERFPVALVAGKLQRRSDKALAHKTTR
Ga0209581_100071227	F091747	N/A	VVPPIPHQRDAMLRERRSFAVEDLTVDTELLESARQAGYATKVLFISTEDPNLNVGRILVRMSRGGQAVPLGTIPESYEEAMKSLAEARRHADDLLVYDNTPNGKGHRLVARFIAGELVKTTHSTPEWLKDVFGRELQSEAKAKEKSPRGR
Ga0209581_100071234	F001966	N/A	MDPKDKPDPYGDWVLLGTKQGPDGPTLAIDQELLTAARAAWPRVLAHARGEMFDKELGPERTAVAADIWDRVLQSVAKTRQRNKDHRPPISDLESYLIGVFHHRFNRLLKQEQRRAETIELVSSIQDLERFEAALDTEWAEQLERSIAVRQITDRMDSWTKKVWEARQYEYSWKEIASWLGITEQQAKMKFRYNLEKIRQSIVRILKRRTPKEPG
Ga0209581_100071235	F015939	AGGAG	MEVLGGLTGLQEGPDGRLPDGTHYEYDPNLRATVEVTPSGERFPVVLVDGKLQRECEALVARKGEAA
Ga0209581_100071237	F078445	GGAGG	MSVRTLALDQYNRDRRRLNTRLGLLMILLIPLPAILLRVRFEPLEMLALVVAIAVAVGIIYPLWWRSKHHPYREDRREQRTRRLAVACRTVAFVSLVGFMVSWVVGSDVSSWIALTFLAAGAAAFIVGFEVEERWKRVVLRRAAKIEADQ