Scaffold Ga0209581

Basic Information
Taxon OID	3300027706 Open in IMG/M
Scaffold ID	Ga0209581_1000497 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209581_1000497 Open in IMG/M

Source Dataset Name

Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	81778
Total Scaffold Genes	86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	75 (87.21%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

81778

Total Scaffold Genes

86 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

75 (87.21%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Centralia

Coordinates

Lat. (^o)

40.7999

Long. (^o)

-76.3402

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007854	Metagenome / Metatranscriptome	343	Y
F053166	Metagenome	141	Y
F055579	Metagenome / Metatranscriptome	138	Y
F071061	Metagenome / Metatranscriptome	122	Y
F093554	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209581_100049711	F007854	GGAG	MNILICNQYGRVQGEVGGTGLTLAVTAQTPRRESVQLQTRIDSIEQLLHLLAIMRAVERRIEQFQLRDAKATQSAEPEGAFDDSICTDGELFSSNGNSKNKIYGRFAQFLIYEQVEQGRLRVFFAVRDEAKRVARFDLHPGEVQAFHALAKRALFACEQVDLLLRDDLSLSIGLNVSDHGVRFEAHTPIWHSQFAITKANDLATLAVFARRSVNQEKTIPVRFGDDANHFSLRKRNDGQVVAEFEHEGSTEKITLSTLQLLELEILAQYALHRAFEPVSVPLRNHLPPQSATAAQIA
Ga0209581_100049717	F055579	GGAGG	MPEDSNGYTHYVVLNETILGEARIIEKCNECISLAFVKLGIGSSRPFNDYAFVENRALVPKILN
Ga0209581_100049728	F053166	AGGAGG	VSFIKKPAEMVTREFRLEEPLAETLDSYAKFIGSTPDHVVASALRFVFWKDKEFDRLQKEQRKARKTSQPAQVKKS
Ga0209581_100049744	F071061	GGAGG	VRDDLRCVCHICQVEDHLFDVLAEPPGNSRFLALAAISPVLAKFTNISELLAYLHSPRTGDYDCSDAGLTLTALVAARATACDSELIHSVLVLAFAPTIHRTYTEVCAWFRELEPADIGQQILAFFLELVASAATENLAGVLPIALSRSLRKASFRWAEKEQRALLKRQDETQTGTDGSERAAEPAFEHVSVLNDFLDYCTRQGLLSGFEREILLRFKVDGLTHKEIQNRHTVLTDQAVRLRVHRIMQRLQEAALSLSTRTGSANHGSRQITPLPVKKSEDGMKRFSLKHSTDFLPISKSRGQLSLDSSRASGEGQ
Ga0209581_100049765	F093554	GGAGG	MRVKSFTYQKSVFGTYYKRSLLNLTKMDDHIAKMLSDGWEILTQTSHTGDRRILRPFAKRDTITVSFKKA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209581_1000497

Overview

Ecosystem & Geography

Associated Families

Sequences