Scaffold Ga0209581

Basic Information
Taxon OID	3300027706 Open in IMG/M
Scaffold ID	Ga0209581_1000237 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209581_1000237 Open in IMG/M

Source Dataset Name

Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	162366
Total Scaffold Genes	145 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	103 (71.03%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

162366

Total Scaffold Genes

145 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

103 (71.03%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Centralia

Coordinates

Lat. (^o)

40.7999

Long. (^o)

-76.3402

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020297	Metagenome / Metatranscriptome	224	Y
F025048	Metagenome	203	Y
F030458	Metagenome	185	Y
F031889	Metagenome / Metatranscriptome	181	Y
F041367	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209581_1000237114	F020297	AGGA	MNFLQIIQTILKVAPAGIQLTQEVVALVQAIETAFSAGQTPVPHQEAVASALGAHLAKQ
Ga0209581_1000237132	F025048	GAG	MLNPAPISDAIASVLLSIPELNAAMGGRINAFHYRLGQEHRLAEAIYKMPAPSMLIAWEGSKGGNFDGQTIWKHRWGVYYRMGNAAGVADPVGYEDLWWITCNRPPGGRGPNIRYLQLYSGLDIMDTPSIDHELDEDLIDRFKGVFIIPEIGDN
Ga0209581_1000237135	F031889	AGGAGG	MYGDIPVEGITIRVPNPPKTAFLRLPTNQEMLERLDQQRSIRRTIGRRKSQTEFVPNLKADLDLFNKIRLDKDGAEFDEFEAGNAISKLSFCEVTDCQRAGDEYRIALRTPFGETIHQVKIPMQRDITVYRRTVVSSTDLPHGQEELRYRIEPAVGLYDSVVTKVEGYAASIKPADVPPHHKSSVVVELVQAIDDLDPALDPNS
Ga0209581_1000237136	F041367	N/A	VRAAELCDGGADGPRGCPDANDVRCGKCGLARTVDDTNAPGACPQCGGWQFTVSRCAHCKLDDLDYARTHSNAGRLFERLLELEFDAAHFSIPWSDVTAEEVRGLQILKEERNRYQREQMQKQPHAFPCPS
Ga0209581_1000237137	F030458	N/A	MPFHARVSRARFVLGPFTAEDMQTIGGVLVDSISTRIRKALNVNDAPAKALKPGRNGRRGYPDYKIARGLMPIRDWIWTGRTLRSLKVKSANENQAVLGFVDPTVDRVAHVNNLREKQFGVSPKDRSALNAAVLAVLRQARAIRVKRAA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209581_1000237

Overview

Ecosystem & Geography

Associated Families

Sequences