Scaffold Ga0209581_1000124

Overview

Basic Information

• Taxon OID: 3300027706
• Scaffold ID: Ga0209581_1000124
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 242874
• Total Scaffold Genes: 252
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 148 (58.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000436	Metagenome / Metatranscriptome	1146	Y
F001330	Metagenome / Metatranscriptome	721	Y
F030218	Metagenome / Metatranscriptome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209581_1000124156	F030218	AGGA	MKHAAWAVTLAGLLAAPAGGAAAQWLGTPAWNSPKGGTMLTIYGDYGHPNTDGGKGNAFGGRVALGVGTVTLTAGVASWEPANFSSRATSFGGTAALRLIGGSLIPVSVNVQAGAAHSGTVTSGTQTLSGETTVLGAVGLSVPLPTPGFTIEPYFSPGIRYHKYSTVPPGARDHETNFGWVVGGNFGFGLVGVHLAYDSEKFDNGTTHGVFGIGANVGLRLPLGM
Ga0209581_1000124202	F001330	GGAGG	MLDTWFLLLAAVAGAAQTPPIAGTWALARIFRAGPAPATRAVPLDSTVYVRMTVEAHPGGWLSGRLDRRYYGRPERSKIEGGPLGNTGRYILGVELERPASQRARTAAWFVGDTLRLGTPLVPDADSIEFRRVAPDAPDPPTVLEVVTP
Ga0209581_100012475	F000436	N/A	MTSLPLVLDDEPIGIILRVGRRLVRPARIWAYCWCADADESQDEPPHRKLPVEHPR