NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209581_1000115

Scaffold Ga0209581_1000115


Overview

Basic Information
Taxon OID3300027706 Open in IMG/M
Scaffold IDGa0209581_1000115 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)259100
Total Scaffold Genes252 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)194 (76.98%)
Novel Protein Genes15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)15 (100.00%)
Associated Families15

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000188Metagenome / Metatranscriptome1692Y
F000512Metagenome / Metatranscriptome1064Y
F000775Metagenome / Metatranscriptome896Y
F000781Metagenome / Metatranscriptome895Y
F000885Metagenome / Metatranscriptome849Y
F002518Metagenome / Metatranscriptome552Y
F006758Metagenome / Metatranscriptome365Y
F007488Metagenome / Metatranscriptome350Y
F009917Metagenome311Y
F015120Metagenome / Metatranscriptome257Y
F017859Metagenome / Metatranscriptome238Y
F027003Metagenome / Metatranscriptome196Y
F044182Metagenome / Metatranscriptome155Y
F065540Metagenome / Metatranscriptome127Y
F084509Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0209581_100011511F017859AGGAGMNRGQMERPVEDRSVAELALQELQDRIEASCLESRYAGMVCDLCIGQVSLEQAFQEIHQKAMEQLVGLLDARVLDDEAALDACLEKIAEESERLAWAALERGTEALREGLAMLEKGQAVLDSGFVN
Ga0209581_1000115119F009917GAGGMGTSGWTYMVVVFSLGAQLVVFLRWIHRRMRDDEIQRVFVRDLALRHLPNIYRALNTIAERQGIEIEETPIVNYVDMGNGGRHR
Ga0209581_1000115122F007488GAGMEIRAYEEKDLEALKAIHARQGFGYEFPDLGNPLFLTKLVLGREAGGKGIVGASLLRLTAEAYLLLEPEAGTPRERWQWLLGLHEATRREALARGLEDVHAWLPPAIAGKFGKRLTRLGWVRDDAWTPYCKRLV
Ga0209581_1000115123F000781GAGGMLTVAQLAPIKDRDPYLYETLVKIVSAVNAASANSGVDPANPSPAPPTVAGVTVQAANGWFDLAIEDPAVTRPGLFYFAESDTTPAFSAPRVYFLGASRNLYVQLGNQTLYWRAYSQYVGSLASSPVTFGTPPTAVVGGGASGPTPLASRGSGALPNGLLRGGNGFGVVPGARVVKTPVL
Ga0209581_1000115124F084509GGAGGMSSYGNAVPPSSVGFGESAAVIAPTDTIFPAPFKSAQVALAPNFSSGKIRAAVEIVWSAAPGSISVQLQTADTDIDAAYVQEGNAITTVNSGNVTRAEFPDVVAKFARIYIATLTNNVTATGKISS
Ga0209581_1000115127F006758GAGGMNQQSDVVSLVNICPQKWPPRYRAYFGSLMVNSPEAGESYAVTPIRGCTSVMDLGDKRTMEIRLSAREIADDLAREINGDSGEGSFHGVFVAAGPEPSEAELAEARKKLEEFHARLVEAADLEWERSHNLMFITDLERRAARELRLEKPWL
Ga0209581_1000115133F000512AGGCGGMIQVIRERHETPENVARRLCLAGGVNRYGEANYRVVWGWNRLGWIGGKFEDRDAAGNLLREVVELRWEPKYPQVNRWHVERWVPAEAYGSPRSWYAQTMERADGKSVAALGPYPERGEYEHCFTLQGPRGEFVQLTPTIVEHVARAIEWSRGQGRAKQRAGLYEREERQEKVYEQWAYDVMDDAAPAMHGMPFVTVR
Ga0209581_1000115138F015120GAGMFAFVKKFFQTRYVGMLEGEVVRLRMENRALLNSLLGTAGVPPVEYAEPAKRVELPRMRRRSWQQIQLKNEIEAREEKKS
Ga0209581_1000115140F000885GGAGGMNSLTNPKVVFIGEVAQIAGVASVVGGVVLSLRHWPAAVALLGGLAAYFVGKKLRGV
Ga0209581_1000115145F000188AGGAGGMSVKPELAFDVCWEVYRGAREVMEAKRGVAALNLEMEMKYAWRPDLRPKMKDWVADFALAGQAALESPDCASRMVMFRLYYLGLAPYERARHFLGLSERGWVNWSEEIRKKCGAEILRRGMFPPRKYFGGME
Ga0209581_1000115197F044182AGGAGMSYSSSQVLFLGELPFWLKISQSIVEAPAAPFQIQRSPSLRDALRRLDAEQWHALLLDLSHPSAQELLAARKLHDGLGAIPLVALLPIDDPQYRNAANSAGAAASLLLDDVSAASLQHAVLSAINTNTIRSSHRKGTSMTLPLDHSPLASDRLPTARVDAISHAINNLLCVINANADILTDQLESTHNAVRSVSQIKKATKSAADLMRLLKTP
Ga0209581_1000115246F027003GGAGGMAILHCRSIERRRTARAVVTIELVVTGLDETKHKFQFLTKTVSVSGNGGVILLDAPLPVGQKFHLVNEFNHRKAACRIVSVRAGKEGKLLGAFEMLCAEQNFWSMAFPASGAKPMKRVFVPKAVVAR
Ga0209581_1000115251F065540AGGVPQWIGQGKVYYEFPWKVEGGFVFYYGSYRDYFNPNLNGDLRTATLYIGKPW
Ga0209581_100011578F002518GGAMVSGEEKCPVTGKRKYDTEGEALATAAHQIATTQALQALRAYRCTWCEAWHLTKKPYKPGKMPR
Ga0209581_100011597F000775GGAGGMKNLDSVFAAYLIGWGVFFLFYLTVARRTSAVRAELERLKNQLPKAK
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