Scaffold Ga0209581_1000042

Overview

Basic Information

• Taxon OID: 3300027706
• Scaffold ID: Ga0209581_1000042
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 498220
• Total Scaffold Genes: 440
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 367 (83.41%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006028	Metagenome / Metatranscriptome	383	Y
F007930	Metagenome / Metatranscriptome	342	Y
F016707	Metagenome / Metatranscriptome	245	Y
F021344	Metagenome / Metatranscriptome	219	Y
F024595	Metagenome / Metatranscriptome	205	Y
F033122	Metagenome / Metatranscriptome	178	Y
F042115	Metagenome / Metatranscriptome	158	Y
F047787	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209581_1000042113	F047787	GGA	MHSSILRRLRRLAIWASLDLVLFAGALALSTSADTSGTVRKSNAAGCYCNCAMSKTAAGCTRMCELPKYASRWWAVSCAKPRAQAPAENPGAGPHYPHAPRAERASN
Ga0209581_1000042206	F033122	GGAGG	MKSTESFSLQQSGLVEVSGWDEDEIFFVERSELGWDEFAGKHVTLSRMLSEGSIIFVRPILPTAAHRANPIPYEAEFVGCSPEGHHQFRLNGVQPRHSKESFFVN
Ga0209581_1000042211	F042115	GAG	MTVKSSNRSHRILYMIMLLGFAVALTTALVLAVERSPEEMKSSTLQSNTVPALRSVCLWGNRNA
Ga0209581_100004231	F024595	N/A	MAAEIVQSHFADSLWRSSGSVAAGCLAILLLCAGVLYAGARRTFIPKLQRGETFQYEVHGRVERKVKTESRVSSTRGPQDLQGDLSSRIRLSVLEVRAAKPQPWVSVQIELSPGPDVPNPRADTKIWKVAFDILNRGQLGNIAGLDALSPEQRLLWQFWVARFAFGWTLPADGMKPGEKWKYEDPELDTSLIADLIWEREITYVRDDKCPVLPVEACAVFITQSALKQKSSIKDSTPEDFRLHQLKTFGTAKGQNQVITYVSRKTGLVLRASEDAQQSMDVTVMKTDGTNGVHYDIDATSHLETLFVPNSLPASSH
Ga0209581_1000042331	F016707	AGG	MFWRNARSRRKSSALSIWGRQVASLLAVALLCCAGLRAEDKLKELQERFDREDHAGKKVRELEKLAPAQFEAATDAANSGNYVEVGLIFEKYRDNVRAAFELLKKQVSDADRHPGSYRQLELGVRQGIRQVEDMLLVSPDAVQPPLRIVRKDLLDIDDVLINLLFPRHTPEPVKAPPAPETKS
Ga0209581_1000042373	F021344	AGCAG	MAKRRKKQLDKGLEARRRARRAGLAPGGTRVIPDKRKKPEKHKADLLAEVD
Ga0209581_100004260	F007930	AGGAG	MFEPHFKDPDPDFKKTYPQKVFCTQHNCEAAVVVANCPNSEEGWSDWRVIDCSLLPPGAVHCGMDCLSQAKLQVG
Ga0209581_100004261	F006028	GGAGG	MSDPEILDRILQTCSYRFRNLVCPNKERIANITAAKFQSEDADWTVIECTLQPNGEVKCGMTCLLQDFQEKDQ