NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209581_1000028

Scaffold Ga0209581_1000028


Overview

Basic Information
Taxon OID3300027706 Open in IMG/M
Scaffold IDGa0209581_1000028 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)563818
Total Scaffold Genes506 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)392 (77.47%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Associated Families9

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000072Metagenome / Metatranscriptome2651Y
F000131Metagenome / Metatranscriptome1986Y
F000231Metagenome / Metatranscriptome1516Y
F000623Metagenome / Metatranscriptome979Y
F001148Metagenome / Metatranscriptome765Y
F001287Metagenome / Metatranscriptome731Y
F003878Metagenome / Metatranscriptome464Y
F014890Metagenome / Metatranscriptome259Y
F028893Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0209581_1000028152F003878AGGAGGMQLAIAAIAVIAGMFFSLAVALLVEEVIFGQVFRLFFATRAVRAREGQRD
Ga0209581_1000028188F014890GGAGGMRRLALASVVLMIPALALAQAGVRGVPGYCSYSCGPYVPLVTTPMISLETVSPNPVGASNATGGLQAGARNSTLQMLSGNTDAVHTQSVWVSGGGSPLISTAVRLPHPEPMAAMHAEHGMRMEHGHGEQTHQAWTYYAGRAEKASPVEAAAAAKTARHATRTYTNQDVERVGQINQEFKK
Ga0209581_1000028248F028893AGGAMGALMIENAFSEELIHRLAERYEENPKEFVQLPQPTVASAVARQAVSELRNEGLVEEEVRGVIRLTPRGYMEYKRKTTFATKRWA
Ga0209581_100002825F001148AGGAGGVRDIYEVLRKKQAEQAQLGKQIEALQTAAEQLRNVAHLLNGDEEDAQESKNS
Ga0209581_1000028316F001287AGGAGGMRLMHVCYAALGFAVARWIFKRQPVVDPVPHFRSSGLL
Ga0209581_1000028369F000131AGGAGGMNLAAGRMFRKRLSILAFFSLGLGLKAEQIPLQALVTPSTIIVKDGKPVKFALHGFVEFESLSEAFAYIDAQARRWPQLKQEQRRTLAGELLRRAIESRVVSMADERPLETITTHTSEELRQALAYVKESTPPGYAEDFLAVQEKWKHSLNCWSAASSIHARVLSNWYPIAEGIELYGATYDSTEHFWQAVKFHPEVTVADLQDLLAHLQRRDWKPWLARLDADPGFYLPNAYAVEFLRHNLDAEHLRWFADELQRQQLNPEEHARTAQQRTAAPFRFTAFEEKVLWGDLADVFHLVYTFSSKDDPIRAALAQHHFDAVYLQQHKMDFMSEDFRSLMLEIWRVKYLKMARFREVIASIPLEIHLSHFLNDGDSPDIPVPVYIEYLNQIRLLARNP
Ga0209581_1000028487F000231AGGAGLANPVSPKVPVNPFYRCAGPNCGTLKRSNDRWWLMWTSFADLSIPVLYLSPWDEEIAQREGTLHVCGELCAQKLQSQFMGNVRDNIVRRGG
Ga0209581_100002883F000072N/AMDAERIIGEIEWLERIFRVPDPRPMSASDLAAANRRHDEKLAHSPWFRLWQSYGICCRPEPPGLILPDPD
Ga0209581_100002887F000623N/AMRTDLLPLCDRHFRTMEACLAPYSPDYSIDFFRCTDKFCGRCFGERIGYATPRRDDVPDMVPDQPRCDMHGRPMFIISFDRSHNRITYACTERGCAQRVLKT
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