Scaffold Ga0209581_1000021

Overview

Basic Information

• Taxon OID: 3300027706
• Scaffold ID: Ga0209581_1000021
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 643573
• Total Scaffold Genes: 596
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 418 (70.13%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000151	Metagenome / Metatranscriptome	1897	Y
F001455	Metagenome / Metatranscriptome	691	Y
F003315	Metagenome / Metatranscriptome	494	Y
F006635	Metagenome / Metatranscriptome	368	Y
F025606	Metagenome / Metatranscriptome	201	Y
F027630	Metagenome / Metatranscriptome	194	Y
F043112	Metagenome	157	Y
F069492	Metagenome / Metatranscriptome	124	Y
F070483	Metagenome	123	Y
F089584	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209581_1000021150	F006635	AGGAG	VPGKRAVLGSVLLLLAAWWRLRAETPQPWKLTKDSAALVGDAKLRDEIFDALNAAEKSGTDPRITHFNVKAATAFEKDGKERIVVGGNVEYEVPEGIHGETSLLNHVTALYGPETTRKDVRFIAFFAQQCGGGASCGDCRDYQLATTDWEHLLVACGQAGDRSVKVTRFADQIVCERNFPEVEAGKIPLAPEELQRLVKSAQEARRGGVTLFTTTRHTGAAALSFSGKVYRAAGADDAAFHYRYPIGGLLQQAMTERDYFLRAIVVTGEEGTWPVVNYRDRQYGYEASSFNHAAGKAPIVLILANGRGQYRMTTFEAALPSAFSTADFMPEALKKFLESHAGK
Ga0209581_100002123	F025606	GGAGG	MAAKQVILYFDDQKDALRFALAAGSVMSGEDETDAAEKRSLIQETQRASRILLDDTGNASSRAE
Ga0209581_1000021400	F070483	AGGAGG	VLKRALVAVVLMLLSGLAAAQNPKITLFAGYSYGNTNYAPGPRSNLNGWEASIEGVRLKPWLTLVADGSANYGWNAFPISCVTVPVCTPAVPNSRAKEYTLLGGPQIAKWYGNFRPFVRLMGGATRTNVATPGFFDSSTNWTVAGGGGVDYKWRGPFGFRVQADYLRTNLFGLTQNMVRASTGFVIRF
Ga0209581_1000021402	F069492	GGA	MGSTMPSIGHGGPATRSPRVQFAHTTPAILRVHSGSRVRGKLQVVSMTGGLLSLSTPLARGSQAKLMFLTEVGTVLGTAEMLASISGTLQPFRFVGLDDDHERRLRHVIQASLDRKRREQGSIVSDRAW
Ga0209581_1000021449	F000151	GAGG	MEVGRTEFSSGNKGMPGSNDPHVMEVVRQAHEELRQLMRQRADVMKRIGTVKQTIVGLANLFGDEVLNEELLELVDRKANGRQPGFTKACRMVLMEANRPLGAREVCELIQQKVPPILARHKDPLASVTTVLNRLVEYGEARTLVRENGRRAWQWAADPDAPANSKLPRA
Ga0209581_1000021541	F027630	GGCGG	VIYNRAVIWPGSRWLAGALTLLLGAALRAQTPGAGGENSPQPGDPLLVTCGEKPPLASHAMKGEVLVAPDGKHRAYSEVEATALATQRGNGFAGPLCVNTSRLYVSADSGDFQLRFLQEPADVETGNSLRLVDWSSDGRRLLAELAEWQYEQPGVTHSILVYDSRYGTFQQPDLPHLLAKLYDRECGFNFRVLGFAGKGAIALEAQPLTPEEEEVLGLSNCAKKKTYFEMDRATESLISVPEMPKLQHNAKAEAAKP
Ga0209581_1000021545	F003315	GGAG	MSLVVKLEDDLGEHGEWVILNGIIPIEDASFSVLRGIDPFGKTVFNHLQAEAFLAEWERAKERVKDESQSEAWQKVKDMALACRSDRDLYLKFIGH
Ga0209581_1000021582	F089584	GAGG	MAIFDETYRVIAVESQSLVVRGNTSGEILTIVNNDPEVPIREEDYPVGQLIALSDPSQQWAN
Ga0209581_100002187	F043112	AGGAG	MSKNHYSTKPKRRNRSGKRKDSQRIAANMAKIRERESSAAGTK
Ga0209581_100002198	F001455	AGG	MAKSSLKLRILYGEGDAEVATTQAASMQKAGHQVTLAVGRKEIEAALKKDAFDLVILGPTLTRNDRHHLPYMVKKSHEGTRVLVLHADGGRHPYVDTATDTGRTIEQILETIASMMAQQAAAAPR