Scaffold Ga0209581_1000012

Overview

Basic Information

• Taxon OID: 3300027706
• Scaffold ID: Ga0209581_1000012
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 813110
• Total Scaffold Genes: 700
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 559 (79.86%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000043	Metagenome / Metatranscriptome	3655	Y
F003145	Metagenome / Metatranscriptome	505	Y
F006635	Metagenome / Metatranscriptome	368	Y
F017542	Metagenome / Metatranscriptome	240	Y
F018220	Metagenome / Metatranscriptome	236	Y
F028956	Metagenome / Metatranscriptome	190	Y
F030503	Metagenome / Metatranscriptome	185	Y
F031275	Metagenome / Metatranscriptome	183	Y
F036396	Metagenome / Metatranscriptome	170	Y
F036945	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209581_1000012188	F006635	GAGG	MNRLLLPTGLFLLAILAAVAASSPPSTASWHLTSESETLVPDATLRAQIFRALDAAEHAGTDPSISHFKVRAATVVTVDGEDHVVLGGNTEYEVPEAIHGESSLLNHVTSLYGPDATRHAVRFVAFFSEHCGAGASCGDCRDYQHAVTDYQRLLVVCGQSSDHTVRISRFADQLVEEEKFPMASPESVPITAAELERLTRAASEARLGGVTLFSTTRHTGAAGLSYTGKIYRAAGGDDAAFHYRYPIGGLLQQADTERDYYLRAIVVVGEKGQWPVVSYRDRQYGFESSSFNHEAGKLPIALILADGLGHYRATTFEAALPHAFSTAEFMPQAVKDFLASHTPTAK
Ga0209581_1000012290	F031275	GGCGG	MMAAFILAFSLLTLLMFFVSYCRSLTAASMHESLTEEVLDVTGIREKAYGRDYARVVQLLRLCPDRNDDRSGLQVVGAYYSFLNFLDQTMSKLSPAVHTWAEEERASCAHFAAVALGRRIALNREMMAQQAEL
Ga0209581_1000012293	F036396	N/A	MASFGHFLGRKVTVQYRVGDTLLPASGTFAADSGRSIFLEHHLEQKGKRSYFRWEIPYQFIYRIEEAQKKEAEPADQATIQTTGAAPSENPQAGAAAAGSGLLPTTGVSLISMPQRPKTA
Ga0209581_1000012348	F036945	N/A	VPWTAALAHSYEMRCPACHAPLELSRFTRVVGALGGLAGAAVAVEALPGIHPGSLWMTRIVAAVLVFGVASAAGVLLAGDLVVRTKGHPATFPHSAK
Ga0209581_1000012450	F003145	GAGG	MQAREAYLDRVTTEVEEVASRVAQLKGRFAKQKVSVKLDHYWELDHVRSRFAEFKRRVQELEDADDLELATLQEEVDLAWKDLMQAVDALMAALH
Ga0209581_1000012474	F000043	GGA	LPGLRGLSVSEFRATPTAAPDYEKGVTVSFSTDGDRDAFLRRLEEYFAPRRFTNAADAFDTVKAYVLESSAKEN
Ga0209581_1000012539	F018220	AGGAGG	VQKIFRCKECQRGMRVVGSTGLGKEIERTVLCPYCKKKNKVKWPRGDTFNVQRVGTR
Ga0209581_1000012556	F028956	GAGG	MFAVLAFGWLNLAFRAWTRDVAHWLILVSVAVAAVFVFFSVSSFRRARQL
Ga0209581_100001271	F030503	GGAGG	MQGLRAPLATLLFVGLSASGTLAGGKPSASLGTILTAENARVGDSKAEVGTTVYSGDHLFTDRQGSVQIRAGAARLLLQSASAAVVNDDGGAPSAKLFLGTATFSTGNAKAFTLYASRAAIRAQSDAPTIGQVTYISEKELLVVSKRGTLTITVDGDTQVIEEGAAYRVVLEPPAMAQGPEGAGSGKHDKGMGGPPLKAGRSYFLVVAVGITALITAFAVSEALESPSRP
Ga0209581_100001273	F017542	N/A	MRKTLLLLSLFLLLPSGCKNQPEIDYSSLDQAGMFSTTLNEIKKIKVSNAEIQQLAALKRAGAGDDFCLALLKAARSHNHDFTSGDSAVALSRAGYSDAQILEMAQADKVDELSDDAVMLKLMGLSNSTVQTVMQRREQGLPTLTSEQIGRLKNTGMSEQKILEFINKGLSGPQAESEISKLEAERDHSHTSFVRVHGRRR