Scaffold Ga0209581_1000011

Overview

Basic Information

• Taxon OID: 3300027706
• Scaffold ID: Ga0209581_1000011
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 820534
• Total Scaffold Genes: 738
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 619 (83.88%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000438	Metagenome / Metatranscriptome	1143	Y
F000626	Metagenome / Metatranscriptome	976	Y
F002531	Metagenome / Metatranscriptome	551	Y
F022248	Metagenome / Metatranscriptome	215	Y
F025326	Metagenome / Metatranscriptome	202	Y
F026812	Metagenome / Metatranscriptome	196	Y
F052066	Metagenome / Metatranscriptome	143	Y
F055023	Metagenome	139	Y
F089292	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209581_1000011207	F000626	AGGAG	MPIVKKAPGIITREVKLEEPVNELLEDYARFIESNADHVVNAVLKKVLWRDQDYRKWRETRRTAQSGTERTQPTEARARA
Ga0209581_1000011372	F002531	AGGA	MASAIATEGTLRIHRSIAGTAAPFRVTYQPYQDGDEPAPAAERSFYHLQDVRAFLNVLGIGADYVRDALRELTAGRSAFLTNIALTEKAVKNAGFGALVAAKG
Ga0209581_1000011421	F055023	AGGAG	MKTEDELDAEIAKLFDEVTTTKVDMVNGKPRISDQATIDQMEREEAARRMEEACGLFLTREREFQRIAQHPRVVTDPQMNALWWDRLEAVYVAEKAVQRLFMGPQSTVADNKLYTRFRKLLLDGSKLRADA
Ga0209581_1000011422	F089292	AGGAG	MLKWLLKFVLQRLLILFVLVVASAILPVASFWLVRDPLGGQLFFWLSPWTCAVWALLISALLGSRFWLGREYVLAWRAARGGYVMSSVKSTALMFLSLFASYFFEFAVILLLPRSLTSLRLLPIAAYAPVGIAALWSVSGGIWSRTDRIVEGRRLADSMNEEPE
Ga0209581_1000011532	F022248	AGGAG	METMLGFAGVTVVTTLALFAALALESLLLHGMLRLMQPATANRRPVRLQVAHGTRLVARAFGSRS
Ga0209581_1000011536	F026812	GGAGG	LRGFAAALAFCSLAVGAGVARADGPSCADLRAQKEKVYGFHVAQLTETQIEAKTKEIDDYWKQVQSSGNGAVGCLKDMLGSEKTDHIFQFDAASFLFQLDKSPDSLNLIKDALVQTDFQETDPANYLSLALELGQRGVEIQSLAAKLLLYPNAVVHISEHSLDLDSDTAALFLYGSMDPQKASEALIAKLQAEQPFVRAAAAHLLAEQMTEPAFRTLSTWKGTAEIQEDYRRNDIQAVMKYDPPEASGLASPKWTREQVLQIIAALPHTRKEFDQVMSTRGAEFDREMREKKATQDELAKAVAEAEPIYGIADHTAFQNAAVATLTADDFETIRQARRHSLHDVSDESLSEYLAYTQIMIRMLNHLDLYKDYRTH
Ga0209581_1000011544	F025326	GGAGG	MNLTMQQKRGLFWALGIVTGATLTSLAWHQINVALSHCIFILK
Ga0209581_1000011573	F000438	GGGGG	MDKFEDIGKRLDEELTRLRKYVEEEVAPATEKRTAQVLREASEKLSEAARKLEARVAARAAQESSQPKP
Ga0209581_100001189	F052066	GAGG	MDRAEQVRQILFARGLTLYRVSQQSAQTFGRSSRFYVPHNLYYDVGDPSLIPTIHQMLALSHITNYRLSDWLAVFGFDLDSISRLRMLIPRQQTTLLDSTVYDTHSWIPWFAERPQAGPVPPIAPLGEFLETAAPRRAADLLPLSKTRFLYGKVGENDAHAFPHLAPGSIVRVDARSSEELLSSTKTNVDRRLFLVEQSFGFTCSQLVVLEKDRVILDSPQRPCAQVELRLGKEARILGIVDAEIRPLTHHHAVWVPPRLAIAPKPQLLPSPSMQANLLDLLRSFRTRVGLSFREASSSSRWIANMLSDELFFTAASTLSDYETLSLPPRHIQKIITLCVLYCIDFNQFLRASGLPLDQAGREAIPDELIPRQVPDRNQGLHVASEKERLQEHGGFLGSLMKNWEEVPLFLRHSLNELTSLKNFSLSDVFWVGGDERPIHPLLINATFVAVNRRVKKPPESTTNAVCKQPLYLILKRDGSYLCGRCTLHEGKLTVNAHPGGPLGTQHFRNGTDAEVVGQVTTILRRLS