Scaffold Ga0209063_1002893

Overview

Basic Information

• Taxon OID: 3300027705
• Scaffold ID: Ga0209063_1002893
• Source Dataset Name: Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB19-Kit (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7964
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (94.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Active Sludge And Wastewater Microbial Communities From Klosterneuburg, Austria

Source Dataset Sampling Location

• Location Name: Austria: Klosterneuburg
• Coordinates
  • Lat. (^o): 48.3
  • Long. (^o): 16.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051906	Metagenome / Metatranscriptome	143	N
F059895	Metagenome / Metatranscriptome	133	Y
F098921	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209063_100289311	F059895	AGG	MTGLDATIARALSGYDAGDVLSFDSLREAANAAQLSQQQVHGQIRRALSAGFIEILTFEIDGETYEACRPTEHPDGLHRRILHYRRTSVPVVVGVAS
Ga0209063_10028934	F098921	AGAAG	MSTPDPALTAALKVMLTDACWRCSDGGGATCDPCLSELVAAAERDAEAATVMTSLRGMFDPMTGRPAGGGW
Ga0209063_10028937	F051906	GGAGG	VTPHAAFIRRAGARHYRCTTCHERVAPGQRVPHLNRETVRAAEYGTTVPTHDLGDDE