NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209816_1106310

Scaffold Ga0209816_1106310


Overview

Basic Information
Taxon OID3300027704 Open in IMG/M
Scaffold IDGa0209816_1106310 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1083
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057680Metagenome / Metatranscriptome136Y
F076516Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0209816_11063101F076516N/AQELEQSIVMLEDALQSGKTHVATYQEDLDVAKKQLANVNKPILTGLQLDNIQEAIEMAVGNFDFEDLENYDKDFELDYDGRVQLSTFDFTNAQDLIEMIVEEVHKLFVEKQEDND
Ga0209816_11063102F057680AGAAGMTKLIDKIKPEVLRALDRHCKQEYPTSHRMIIASLQDLYNYRELTIEQLSQLKTFLPKEFEPITSLDWCYGDHILQKKYQL

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