Scaffold Ga0209816_1095592

Overview

Basic Information

• Taxon OID: 3300027704
• Scaffold ID: Ga0209816_1095592
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1172
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006529	Metagenome	371	Y
F057680	Metagenome / Metatranscriptome	136	Y
F076516	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209816_10955921	F006529	N/A	MTDNKRVTNKQILQKIDDLKVGEEGLNTLALKIVSRMVKLKSMEDWFEHVSKSKPAFSVAYKDLDLTEEED
Ga0209816_10955923	F057680	N/A	MKTMTKLIDKIKPEVLRALDRHCKQEYPTSHRMIITSLQDLYHYRELTIEQVSQLKTFLPKEFEPLTSLDWMYGDNILQTKYQL
Ga0209816_10955924	F076516	N/A	HSIVMLEDALEAGNTDIRCYQADLDIVKKQLANINKPVLTGEQLDEVQQAIESAVGNFDFDDADNYDKEFELDYDGRVQLSTLDFTNAQELIEAVVEKVHSLFAEAEDEDND