Scaffold Ga0209816_1006960

Overview

Basic Information

• Taxon OID: 3300027704
• Scaffold ID: Ga0209816_1006960
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7045
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (31.25%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025148	Metagenome / Metatranscriptome	203	N
F061284	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209816_10069601	F025148	N/A	FFIMAKVDFAKGHGTILSGSVQYARLTTESGPDGMSEKYGCDLFLDDASVKNLTDLEIIDHVRAKNPQGELKHDVPVVKIKSINVPKAYLANRQMFDGLIGDDSEIRANVWIKKWEHKGKKGLSVWLSAFVITKLVEYSSNDSDALFEGIPDLGDPTPEQVNPIPASKPNVATAAQAFDNASSEDDLPF
Ga0209816_100696013	F061284	N/A	MTHDQAKKHEERAFDYLLKRYGWQIFTTPHFALIDGVAAMDNEITHVVEFKSRNESLSSMERFGTYLISNDKIMNGMEMARMMCVPFILIVCLIKDGTIIAVEIGDQYGLNDIGIEVKPTQTQKSIQGGKIVRNNAFIDIDKFHIL