Scaffold Ga0209816_1001095

Overview

Basic Information

• Taxon OID: 3300027704
• Scaffold ID: Ga0209816_1001095
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20431
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042028	Metagenome / Metatranscriptome	159	Y
F097663	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209816_100109513	F097663	N/A	MENNITIKPCSIILPTESVFYREFDTRIKIIKLPRHHHFSYNKFDNVGKRRFRIVKIYRNKHEYDCNLYTSNEEIINDVLTSGVQIAEITKPLNKTHKELLHKSDRKIVIREKLWFNRYKHKITSSHNWDKATTISESRNMVEWIYEHFPKHDNRIVSTAYGSYFASSNRLSQPPTIFTNSEETMMLMKLAYSNMLRMTMETCITLQELKD
Ga0209816_100109516	F042028	AGGAG	MATRNPANVIEFGVHNYGATMTSWTITAAADISAEVNPGEEMEAILECVSQHGTIMGLSDHATGGTVFTVTVENSSWADAAALQTALQALSLTTAGAMTVA