Basic Information | |
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Taxon OID | 3300027703 Open in IMG/M |
Scaffold ID | Ga0207862_1094666 Open in IMG/M |
Source Dataset Name | Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 898 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico |
Source Dataset Sampling Location | ||||||||
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Location Name | Luquillo Experimental Forest Soil, Puerto Rico | |||||||
Coordinates | Lat. (o) | 18.0 | Long. (o) | -65.0 | Alt. (m) | Depth (m) | .1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F021579 | Metagenome / Metatranscriptome | 218 | Y |
F048444 | Metagenome | 148 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0207862_10946661 | F021579 | AGGAG | VQKAHLYEAILLVNRRIDDAVRGLERLKRAKDSGLRVPYIDEKLTLLEMHPALFNGFFCNNIKISEQQDELRFSKLHCIHERRILDEVQVYRHVQAVEEARRLEGKAPKLRFLTSEKQLTWERQYPKPPVDLGDEGQRSEGGQK |
Ga0207862_10946662 | F048444 | AGGAGG | MNLRLFQELMELNLAFEQVVRGLHRMEKVRIFHSDIVRVSRADVESARVEVNRQFFDSFDEVVEDDALWAYRFQREYNKKIKDPDDLYLEIKDSEERRKKKGLPPRLVILP |
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