Scaffold Ga0207862_1000419

Overview

Basic Information

• Taxon OID: 3300027703
• Scaffold ID: Ga0207862_1000419
• Source Dataset Name: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12887
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (56.25%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Luquillo Experimental Forest Soil, Puerto Rico
• Coordinates
  • Lat. (^o): 18.0
  • Long. (^o): -65.0
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043651	Metagenome	156	Y
F047875	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207862_100041911	F047875	N/A	MRAISWQVEGSVGDSWRKWLEALFEPVLLPHLWRVLDLSARQSAREIIVLDAELDRSMKPWPRKRSIDAGGLLLQQCTPRGERLMARLQEAIQAGVARGHFATLYGVRCAAFSIPIRAAIHGYLLQELVIGAPNETGQVQLLEEAVESVNEFLRISSNGLNEGLRFHG
Ga0207862_10004193	F043651	AGGAGG	MTGNFRRGLLNERNTAMDEAMILSIEADVAPDTLRVSLQWEGDHDISDFDLQRFGKVLQIQDETEHTGWAIIKRRFHARIAHTLPGWAMHESMRPLSAGDTIPLRPDLE