NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209036_1082945

Scaffold Ga0209036_1082945


Overview

Basic Information
Taxon OID3300027702 Open in IMG/M
Scaffold IDGa0209036_1082945 Open in IMG/M
Source Dataset NameMarine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - DCM_A/KNORR_S2/LV (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)982
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-37.9951Long. (o)-44.9972Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018197Metagenome236Y
F068937Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0209036_10829451F068937GAGGMNQRANERELNDNQFEQLIDKYIDTIVDSMSMEDFQQYVRDDMNDFLYKCSESEVINEIKYTLDDEMLEEFITTIKKESKD
Ga0209036_10829452F018197N/AMNNKSLEETNIKEWTNMPPISDELYNELVKEFNNERQYFFNDSYNLED

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