Scaffold Ga0209036_1016602

Overview

Basic Information

• Taxon OID: 3300027702
• Scaffold ID: Ga0209036_1016602
• Source Dataset Name: Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - DCM_A/KNORR_S2/LV (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2657
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -37.9951
  • Long. (^o): -44.9972
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013094	Metagenome / Metatranscriptome	274	Y
F023620	Metagenome / Metatranscriptome	209	Y
F029784	Metagenome / Metatranscriptome	187	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209036_101660211	F029784	N/A	LMCSQIYAHPVEGYKCFANANKSQGTYYTCCDLDTREIRYVTYIYDGYFMGYYLVQSAIKVTENFANSQQKIFLSSASNKWPYYKGNDDEYTIDRQYPMQYDIPSLDEVEYSYLDSLLTAGTSK
Ga0209036_10166023	F023620	GGAGG	MKTALFLSEYDLSTVYYLCSYYMDNADLDFQDKAYIKELQNRVDKLMEVSN
Ga0209036_10166026	F013094	GGA	MISAFFTGVVVAIPTSLVMMKLLNSSLFINNSELLDMNQKISVIIHQLDDYREERREEREKFLNVSDDTK