NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209036_1000897

Scaffold Ga0209036_1000897


Overview

Basic Information
Taxon OID3300027702 Open in IMG/M
Scaffold IDGa0209036_1000897 Open in IMG/M
Source Dataset NameMarine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - DCM_A/KNORR_S2/LV (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12870
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (55.56%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-37.9951Long. (o)-44.9972Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001419Metagenome / Metatranscriptome698Y
F001504Metagenome / Metatranscriptome681Y
F013897Metagenome / Metatranscriptome267Y
F023620Metagenome / Metatranscriptome209Y
F047729Metagenome / Metatranscriptome149Y
F059056Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0209036_100089712F023620GAGGMKTALFLSDYDLSTVHYLCSYYKDNANLDIQDVEYINELQNRVDKLMEVSN
Ga0209036_100089714F047729N/AMSELSALKDAQYHLSKLEGLIKNNKWYSHLYSHLAAVEGELQRQVALLEKDKSEDIPDTEKLYDVLEVSTNGMNPPDASYTSLTRVVAAQKYESLLSEGISPDDIKIKRVK
Ga0209036_10008972F001504AGGAGMSYDTEHYYALHTFLEDDELHNIWNIVEKAMNRHGFDVSNSELSMRLYDQELDENIEHDMGNLL
Ga0209036_100089722F001419N/AMNYEEILKCYEGETEEHSNTAFEFGIQNDLYYQLFYSYDWN
Ga0209036_100089723F059056N/AMTGIELFIVIGGCYAIYTVGMAIATNIDYYSTNKEEQLVKRRRDS
Ga0209036_10008975F013897N/AMSFTKEQLLALMNTIDFATDNDASYEEYTILQSGTSDLEPIRDILYNEYITRGENS
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