Scaffold Ga0209445_1023912

Overview

Basic Information

• Taxon OID: 3300027700
• Scaffold ID: Ga0209445_1023912
• Source Dataset Name: Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - NADW_A/KNORR_S2/LV (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2324
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -37.9728
  • Long. (^o): -44.9905
  • Depth (m): 2502

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000107	Metagenome / Metatranscriptome	2222	Y
F001156	Metagenome / Metatranscriptome	763	Y
F006126	Metagenome / Metatranscriptome	381	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209445_10239122	F001156	AGAAG	MSKRKPKDYSKAILERIVGTKSKATLAMAFKLAFAEKYNVKREEIKQGIVDKVYNKEKVE
Ga0209445_10239124	F000107	N/A	MKNTEVVDTTSKYIVKSTGIGSETNEELVDAEELTAGTDGSKVSLIECYHLIEGTGTLTIRVGSETLELTGKGKYGLRPDQLKFGNDKQILLTTDSNVKSYLLVTEFRRN
Ga0209445_10239126	F006126	GGAG	MSDLSFKKFTRTLNERRYIGPQGTVEYNKLSPKMRAAINDVYSMINKASYPIVSKIEGIIRAVSKRHGVSTYDIDDYFDNELIK