Scaffold Ga0209446_1004248

Overview

Basic Information

• Taxon OID: 3300027698
• Scaffold ID: Ga0209446_1004248
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3516
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036897	Metagenome / Metatranscriptome	169	Y
F075620	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209446_10042482	F036897	N/A	MFQKLAFRWPPQPSTVIGFGILAGSVCYFVTGDPVWAGLAAAVVKILVPDNSTAAGQVFEAIKTVAQVVGRPLPTLSQPEPVASGDRGFDGGSLCREPPGK
Ga0209446_10042485	F075620	AGG	MRKRPLVSYTFIPLLVLSGCAEVGKLTAADLTNAAQVATQSGDPQGAACWVALTPVANAIETAPAPGLASIIETDRIFTAATQGLNAPCNAVGGLILSMVLRKTVPFLP