Scaffold Ga0209446

Basic Information
Taxon OID	3300027698 Open in IMG/M
Scaffold ID	Ga0209446_1000239 Open in IMG/M
Source Dataset Name	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027698 Open in IMG/M

Scaffold ID

Ga0209446_1000239 Open in IMG/M

Source Dataset Name

Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13081
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (88.24%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

13081

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (88.24%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location Name	Calvert Island, British Columbia, Canada
Coordinates	Lat. (^o)	51.62	Long. (^o)	-128.09	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Calvert Island, British Columbia, Canada

Coordinates

Lat. (^o)

51.62

Long. (^o)

-128.09

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014771	Metagenome	260	Y
F019704	Metagenome	228	Y
F021893	Metagenome	217	Y
F073304	Metagenome	120	N
F093562	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209446_100023911	F019704	GGAGG	MKRRLKVRELMQREGFRGEIVQLFRSPSTGMIHGYDGYDVTFNEESLVVGLSYGDLSLGLKVSYGIFFATGAKLPSAINVQPAVGVPTETTGNAGSVISTRAGGTGVV
Ga0209446_100023912	F093562	GAGG	MSVRSRLLAEAEKQISNPFLLCALVSQRTRQLMMAGNAIMSTAQLVDSALNELIAGALEFERGKPRRAPLVPAESRSKESHGARESLAIPAISDADLSVEAT
Ga0209446_100023913	F073304	AGGA	MATRSWHSRGFPSWRIWLISRVSRLRNIKNLAPGELPFAGGLVLLLAASMLWRVFPMAVIGAGLVLILQEIADPSPLFLTVPWEALEFVLSGKVRANHFWLHRTQSLLRESRDSLAKIDGCATRGGFFLVGATFNETQIQWASQTAWRAMCQKPSAKEAATGCKTMRFLLALWLIAGGLAALSLFQGVDLGSGLLLCALCGAAGQLLAGPAEKLLSPWAGRVACSNKETWAGRLEVESLAIPRFLWFKRSLVFQVRRTPAQESKEG
Ga0209446_100023914	F021893	GGAG	MPDFYTSQQLAQTLGIAEATIAALQTKGLLQPTVNDGRLFFSSRQAHCLRAALRWARKDKIDLQEAFARVEERWLAHTSATKD
Ga0209446_10002397	F014771	AGGAG	MKARGSITQLIRNRRPGYILDEDGRLVEFDESSLQGLDPQDLIVGDWVEYEELNPIEGRRASRIRRLIQLAEE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209446_1000239

Overview

Ecosystem & Geography

Associated Families

Sequences