Scaffold Ga0209446_1000004

Overview

Basic Information

• Taxon OID: 3300027698
• Scaffold ID: Ga0209446_1000004
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 84518
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (80.30%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001686	Metagenome / Metatranscriptome	652	Y
F010795	Metagenome / Metatranscriptome	299	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209446_100000413	F001686	AGG	MNEFTAWMQSNWYALGNLLAQFGFLAAGVWFARKILKTIRASQEQVGALLKLSFAGAISERPSIAAEDRSFANASPYWLTPQEKPAVDLPEPQESGPNRWAVARHRAMVWLQTPMSNGEAAPWRRAIKWLQAPARS
Ga0209446_100000415	F010795	GAG	VKAVHLLRQHGIAVGFPMQTADGQIIFSVGKDTLTANQILDLLERGELHAEGVRKSVEAQASAKPLRKKAASP