Scaffold Ga0209033_1041685

Overview

Basic Information

• Taxon OID: 3300027697
• Scaffold ID: Ga0209033_1041685
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1694
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006181	Metagenome / Metatranscriptome	379	Y
F010317	Metagenome / Metatranscriptome	305	Y
F019468	Metagenome / Metatranscriptome	229	N
F027823	Metagenome / Metatranscriptome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209033_10416851	F027823	N/A	MNITAAINIPCVSQTNLWKGCFEAHFMSGREIDVKYPILNTKWKYSHHKLRGVYDDYDGYYYAYEKDIGTGIMFDPWLREFKVNMSIADDVYKTKMYHTTVESNPILLVLYKKKD
Ga0209033_10416852	F010317	AGAAGG	MNKIYIEKLAEVPGGLPARNMEEHIDGQYQGDSHSIPVEYNLEGVLSYDIEVGKPVVVGRTKRNGVEAYGVFSTSTVTEVGNNYFKTKNSVYSYKFL
Ga0209033_10416853	F019468	N/A	MTIEKTYKLSIKDTAYFLTEEEVTKLYEQCRKALNIDNATPYFPNYPPGVRKFDDDKTTPLNPTTPSIPYPYDTYPWYTPTYPSGPNYPYWTSPNTTTTCGTINAGEGNCVMDTNWQPNLCNTVKSSNDINFISDDMAVHEDNQKWRSSVEQALDKLNANKKV
Ga0209033_10416854	F006181	N/A	MKNIVHVIYPDEAVHSFVMETDMVVSDILERVFAEWNHGSGMESELFIRSIKRSLSVNDIVGVNGKYYLCESFGWNEVTPQFVNELEEEVSNHPNRIQGAWFALNDVMWDRKSKNKLELV