Scaffold Ga0209033_1034523

Overview

Basic Information

• Taxon OID: 3300027697
• Scaffold ID: Ga0209033_1034523
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1916
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005299	Metagenome / Metatranscriptome	405	Y
F008491	Metagenome / Metatranscriptome	332	Y
F025025	Metagenome	203	Y
F103233	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209033_10345232	F103233	N/A	MSKGQTDNELYEALYDMGYDFGEIDTEDFDEDGFAETAVNLGYRWDENKKEWFNK
Ga0209033_10345233	F025025	N/A	MSKVKVKEIKLGKRGYKAVVKNKKFNFGDGKHIYEVIELSGPKMDRTRIFVDEESVRKYVGALDTEMKMDKLETSLIKNVLSKKEKKELLASSVLEGALVSTKATLDPAYSTFYNGGSLNVESTTANGEDTDK
Ga0209033_10345234	F005299	N/A	MNYYQLIAFAQQLKQNNMSNRPTHNPNTFDGMDSPRDIWEEKVGYDSANKKMIAKVYKHLYNVMEFVTKPSWTAVIREMLIEDNKLGKVSLNGYYSTIRTNLKDIGVIQYNGRKGLSKGPNWDRFYSDEDWSWFITNTNSGGYGTIIK
Ga0209033_10345235	F008491	GGA	MAKKIATKVNYQVTELVNNLNEAATTQSEQKRDFFTTRALYNAKRLSTILSTAKVGAMALILSVGMVACGTASNEAPKADSTAVAVDTTVKAPVDTLSTEVK