NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209033_1027654

Scaffold Ga0209033_1027654


Overview

Basic Information
Taxon OID3300027697 Open in IMG/M
Scaffold IDGa0209033_1027654 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2215
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000441Metagenome / Metatranscriptome1136Y
F001781Metagenome / Metatranscriptome635Y
F007468Metagenome / Metatranscriptome350Y
F024786Metagenome / Metatranscriptome204Y
F025671Metagenome / Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0209033_10276541F025671N/AVEYCEDDCGEFCSECNQGSWQDEEAMAKCQTHMVLLDTTEKAEV
Ga0209033_10276544F007468GGAGGLTKSSRFLEYMKLHLISLNQDMDKDLNVESKINIQGQIMATEHLLSVATDIMNSTNERYE
Ga0209033_10276545F000263AGGMEIKHSELPSHLQRMVDADVTGLDIMHGELKNLMLIAEQELADAQAIEDETEEAMDSMDRTRCEGVLDTLVSLYALTYDLSFAIGLRTENRKDGHL
Ga0209033_10276546F001781AGGAMKPEDKDKLNKCLEILDTTDLGLSMVWLWTWSTINNILDDETYKAKVTQDQMWDNLCEAVEAGHGFSLEYGAEQHQDDVLEWMMNRDYIVDTMFEDDEEEEEDATD
Ga0209033_10276547F000441AGGAGGMQQTDKYINEQLSKAQALLWSGSLHEQDEAHNIIAKLIKDRMSEREGTNE
Ga0209033_10276549F024786GGAGLPVYRVFGTKYTNYYTIIEAADQFEAVDLANALPEIEWNSIPTGDVVEATDVYLNEDTEEELQLNI
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Institute for Fundamental Biomedical Research
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