Scaffold Ga0209033_1018009

Overview

Basic Information

• Taxon OID: 3300027697
• Scaffold ID: Ga0209033_1018009
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2935
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010683	Metagenome	300	Y
F011393	Metagenome / Metatranscriptome	291	Y
F018718	Metagenome / Metatranscriptome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209033_10180092	F011393	N/A	MSEQVANNRCEHCNVVLHENESGEYYPVVNRLEKHTLIRGEYHPIGSRFQYPRNWGKKKGATILLEHRIEDVRKQIADAQLDLDKLQACLEKVQQWDSTEK
Ga0209033_10180095	F018718	GAG	MTIREFYLETYPTDDLGLELNPTPTFAGLLNQLIVGGDVYRYIGVGDSIIRERLFERLAEELNVKYDYVYNLWLK
Ga0209033_10180097	F010683	N/A	MSKKVTKKVVKPVKKAASKKAVAMNIIKHKRVVLEQVGTESLPDMVFISAAPAWAKAIVGKRYVSLDRAKAIIEALDAEKLINKGAKSILKEMDAAGITPLDVDNI