NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209033_1011074

Scaffold Ga0209033_1011074


Overview

Basic Information
Taxon OID3300027697 Open in IMG/M
Scaffold IDGa0209033_1011074 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3990
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000441Metagenome / Metatranscriptome1136Y
F000980Metagenome / Metatranscriptome814Y
F002387Metagenome / Metatranscriptome565Y
F047650Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0209033_10110741F000441AGGAGGMKQTDKYINEQLSKAQALLWSGSLHEQDEAHNIIAKLINDRMG
Ga0209033_101107412F000980N/AEYTFKDGYGWPNGVTDLTCRCGTSCTLLSVEDATIPYTDTPLPKEERMETETPAVTVPDTYNANLLVTYKVIHGYSDAEYATDKVASIEWSLHNGRQSQKQANMYASKIDTVKDIITEAYADSDDQETLRAIAEALDIELTRTVEWSASIEVSGTIELDLLAGYDTDIESEITDALFADSNNGNIEVTDQEVCNVSEN
Ga0209033_10110743F000263GGAMNAEDIGLPPHLQRLVNAGVNGLDIMHGELKNLMLIAEEQLAWAIDIEKETEEAMDSMARTEAEGRLDTLVELYKLTYDLSFAIGARDEASR
Ga0209033_10110746F002387GGAMASFLEDVNQMVIDAVYQDIAEQLLDDWINNNLDEGQYYADKQFAEMSGDKFIQDEFNKFYNIKEGDEDYLC
Ga0209033_10110749F047650GGAMTSEDLNLIYYCDACSVARASHLIKLLDGELAFCGHHFNKYKEALDKKAYEVIELNKTEEAIPILEKAE
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Institute for Fundamental Biomedical Research
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