Scaffold Ga0209033_1007101

Overview

Basic Information

• Taxon OID: 3300027697
• Scaffold ID: Ga0209033_1007101
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5272
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007921	Metagenome / Metatranscriptome	342	Y
F084237	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209033_100710111	F084237	GAG	MTNPDRDRSMRLKLAIEEMLKDIDMSGEEWNDHDKDGVPYWEKYEERLRYMEENGI
Ga0209033_100710112	F007921	GGAGG	MINWLVNRIFNWDPLRKAVFDEVGLYQSVTRSMWEHEKEGPTNLTWSEGDRWYGWTYNKDKKRYYFDDIGNDSLMGLWEDQWLREADEQRPL