Scaffold Ga0209033_1003018

Overview

Basic Information

• Taxon OID: 3300027697
• Scaffold ID: Ga0209033_1003018
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8948
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (93.10%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000868	Metagenome / Metatranscriptome	853	Y
F013527	Metagenome / Metatranscriptome	270	Y
F053291	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209033_100301827	F000868	GGAGG	MSFLENENQMVIDATYSEIGEMLVEDWVNSNLDEGQMYADFRFAEMADNNYLKGRFNLFYDLNPGDQYYLECEEE
Ga0209033_100301828	F053291	GAG	MITIQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMVKYMEAIEC
Ga0209033_10030185	F013527	AGGAG	MPVYEFNAFINVEAESYDEAIDTFQFQLKYGINKNNVYVADIRDLELSE